Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14 176 5e-39 >seq14 Length=654374 Score = 176 bits (194), Expect = 5e-39 Identities = 570/880 (65%), Gaps = 10/880 (1%) Strand=Plus/Minus Query 53785 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 53844 |||||| || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 284595 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 284536 Query 53845 TGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT 53904 ||| | || || ||| |||||| || | ||| || | ||| | ||||||| || Sbjct 284535 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGAT 284476 Query 53905 TATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCAAACTCGTC 53961 || ||| | ||| | ||| ||||| | |||| || ||||| || Sbjct 284475 ---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC 284419 Query 53962 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 54021 ||| || | | | | ||||| || || | || ||||||| || ||| || |||| Sbjct 284418 TCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCGTT 284359 Query 54022 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 54081 | | || || ||||| || |||||||| |||||||| || | || || || | || Sbjct 284358 CTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGC 284299 Query 54082 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 54141 | ||||| || || ||||| ||||| |||||| | | | |||||| || Sbjct 284298 ACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTG 284239 Query 54142 CCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 54201 ||| || || | ||| |||| | | | || || || ||||| || ||||| || | || Sbjct 284238 CCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATA 284179 Query 54202 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 54261 | ||| ||||| || | || | | ||| |||| || ||| || |||| ||| ||||| Sbjct 284178 GCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGT 284119 Query 54262 CCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCT 54319 |||| || ||| ||| | ||||| ||| | | || | | || || || || Sbjct 284118 ACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GGCCAATACCACCA 284061 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 ||||| || ||||| | || || || | ||||| ||||| ||||| ||||| || Sbjct 284060 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCG 284001 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 ||| |||| | || | || || |||| |||| | || || || || || || Sbjct 284000 TCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAG 283941 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499 | || ||||| || || || || |||| || | || ||||| ||||| | || Sbjct 283940 AGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACT 283881 Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 || ||||| ||| || || | |||||||| | |||||||||||| | Sbjct 283880 CGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGC 283821 Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 || || ||||| || || || || | ||| ||| |||||||| || || ||||| Sbjct 283820 TCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAG 283761 Query 54620 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 || | |||| || || || || || | ||| | |||| Sbjct 283760 TATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 283721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712946507680