Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq22 95.1 1e-14 >seq22 Length=541522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| || |||||| |||||||||||||||| | | || || ||||||| ||||| Sbjct 203200 TGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTG-CGGCCGTCCTCAAGCTG 203142 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || |||| || || ||||| || || | | ||||||||| ||| || Sbjct 203141 CTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTT 203082 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || || |||| |||||| ||||| || ||||| || ||||| Sbjct 203081 GGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 203022 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| Sbjct 203021 CAAGGTCTTGACGAAGATCTGCAT 202998 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || ||| || | || |||| |||| Sbjct 203938 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGC 203879 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | |||||||||||| || | || ||||||||| ||| || Sbjct 203878 TTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTG 203819 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || || || || | ||||| ||| | || ||||| || |||| Sbjct 203818 CTCTTCACGTTGTCGATA--GTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGG 203761 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||| ||||||||||||||||| Sbjct 203760 TGAGAGTCTTCACAAAAATCTGCAT 203736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245213757166