Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq14 352 7e-92 >seq14 Length=654374 Score = 352 bits (390), Expect = 7e-92 Identities = 1121/1703 (66%), Gaps = 54/1703 (3%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTGTTGAACGCCCGCA 363458 ||||| ||||| ||| ||||| ||| || | ||| | ||||| || ||||| || Sbjct 283771 AAGACTTTGGAGCGATCATACCTC-CTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCA 283829 Query 363459 GCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCG--CGATT 363516 ||| ||| | |||||||| || ||||||| ||| || || |||| || ||| | Sbjct 283830 GCACATGATCATGCGTGTGTCTGTTGGTAT---TTG---GGGTGATGATATCGAGCGAGT 283883 Query 363517 ----GAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCCACGCCAACAAT 363569 || ||||| || || | || || | | ||||| || ||| | || || | Sbjct 283884 CTTGGAGACATACAACCTGAT--GTCCAGCAAAT-TCTTCACACATGCCTCTCCCACGCT 283940 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | ||| || || || | | | || || |||| |||||||| | | | |||||||| Sbjct 283941 CTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGA 284000 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 ||| || ||||| |||| || || || |||| ||||| | || ||||||| || Sbjct 284001 CGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGC 284060 Query 363690 AGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGC 363747 || || ||||| | | || | ||| | | ||||| || | | |||||| ||| Sbjct 284061 TGGTGGTATTGGCCTGAACG-TGCACCGTATCCGTGCTACTGG-CTCCTACATTGCCGGT 284118 Query 363748 ACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || || ||| ||||| || | ||||| ||||||||||| || |||| ||||| | Sbjct 284119 ACCAACGG-TACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCG 284177 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || |||||||||||||| ||||| || || ||||| || || ||||||||| Sbjct 284178 CTATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTG 284237 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || | ||| | || ||||| ||||| ||||| || ||| || |||||||| | || Sbjct 284238 GCACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCG 284297 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 ||| ||||| || ||| || |||||| | |||| | ||| |||||||| || || Sbjct 284298 TGCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGA--A 284355 Query 363987 AGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TGTATG 364043 | | | | | ||| | || | ||||| |||| || || || || |||| ||| | Sbjct 284356 AAGAACGGCGACTGGACGCTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGT-TA 284414 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 || || || | | ||||| ||||||||||| || |||||| |||| ||| ||||| Sbjct 284415 CGGAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGAC 284474 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 || || ||||| || |||| ||||| | || | |||| |||||| |||| || Sbjct 284475 TATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCC 284534 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | ||| | ||||| ||| | |||||||||||| |||||| || |||| ||||| | Sbjct 284535 ATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCA- 284593 Query 364224 TCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 || | || |||||| || || || |||||||| ||| || || |||||| || | Sbjct 284594 TCCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTG 284653 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACT---TTTG 364336 | || |||||||| || | || || || | || | | | |||| || | || Sbjct 284654 TCTGCAACCTTGCCTCTCTGGCTCTGCCCTCTTTCATCAACTACGATGAGGCTTGCTATG 284713 Query 364337 ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCG 364396 || | || | | | | || | | || || | |||| || ||||| | |||| Sbjct 284714 ACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATCG 284773 Query 364397 ACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTCATCGCCCGATT 364455 | ||| | || || ||| | || | || ||| ||||| || || || || Sbjct 284774 ATGTGAACCACTA-CCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCATC 284832 Query 364456 GGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC--AAGATGGCATTTGATT 364513 ||||||||||| |||||||| || || | ||| | ||||| ||| | || || | Sbjct 284833 GGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCT--TGCTCTGCGCATGCCCTTCGAGT 284890 Query 364514 CGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGA 364573 | || || ||||||| || || ||| ||||||| || || || || || || | | Sbjct 284891 CACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCA 284950 Query 364574 CTG-CTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 ||| || |||| | |||| || |||| ||||| || | | || ||||| Sbjct 284951 CTGCCTCCGTG-CAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCC 285009 Query 364633 CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAAC 364692 || |||| | ||||||| || | ||||| |||| ||| |||| || ||| || Sbjct 285010 GCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGAC 285069 Query 364693 TGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC--TC-CCTCGTTACA 364749 ||||| || || || | || |||| || || | || ||| || ||| || Sbjct 285070 TGGGAGACTCTTCGAGAGGAAGTCAAGACACACGGCATCCGTAACAGTCTGCTCCTT--- 285126 Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || || ||| | ||||| || || ||||||||||||||||| || Sbjct 285127 GCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCC 285186 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||| | || ||| || ||||| | || || || | ||| || || Sbjct 285187 TACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCC 285246 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || ||||||| ||| |||| || |||||| || ||||||||| ||| Sbjct 285247 TGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATC 285306 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || || | |||||||| | ||||||||||| | || | ||| | ||| || | Sbjct 285307 ATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTG 285366 Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049 || || ||||| ||||| || || ||| || || | ||||| || ||||| ||| Sbjct 285367 TATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGT 285426 Query 365050 GCTTTTATCTGTCAGAGCCAGTC 365072 || || || |||| |||||| Sbjct 285427 GCCTTCATTGATCAGTCCCAGTC 285449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303334128711812