Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq10 116 8e-21 seq9 104 5e-17 >seq10 Length=724679 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| |||| ||| ||| | |||||||||||||| |||||| |||||||| || Sbjct 715379 GAGGCTCTTCCCTGCGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAG 715320 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| || || || | | |||||||||| | ||||| || ||||| ||| ||| Sbjct 715319 TTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAAC 715260 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 ||||| | ||| |||||| ||| || || || || || ||||||||||| |||||| Sbjct 715259 CCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGT 715200 Query 243724 GT 243725 || Sbjct 715199 GT 715198 >seq9 Length=730814 Score = 104 bits (114), Expect = 5e-17 Identities = 175/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| | | ||| | || ||||| ||| || ||||| || ||| | |||| | Sbjct 11210 AGTCAATGGTGGTCATCTCAGTATCGGCGGAGTCAAGGTCGTGCTCGACGAAGACAGTCT 11269 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || |||| |||||| ||| ||| |||| || |||||||| ||| Sbjct 11270 TGACCTCGCTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGA 11328 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || |||||||| || | |||||||| ||| | Sbjct 11329 GTGGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGG 11388 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 11389 AGGTGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 11448 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 11449 AGATCCTCACC 11459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102863523662100