Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq39 120 3e-22 seq22 120 3e-22 seq8 100 3e-16 seq10 98.7 9e-16 >seq39 Length=350926 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 70117 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCA 70058 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 70057 GCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 69998 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 69997 ACGTTGT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 69939 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 69938 CTTGACGAAAATCTGCAT 69921 >seq22 Length=541522 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||| | || | || | || ||||| || || || ||||| |||| | Sbjct 203962 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 203903 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || |||||| |||| | ||||||||||| || || Sbjct 203902 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 203843 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||| | ||||| ||| ||||| | |||||| Sbjct 203842 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGT-CGATAGTGTCACTGGACTCGAC 203784 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| ||||| || |||||||||||||| Sbjct 203783 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 203736 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| |||||||| | ||||| || || ||||| || || Sbjct 203194 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 203135 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| || ||||| || || || ||||||||||||||| || || |||| Sbjct 203134 GCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 203075 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | ||| || |||| ||| | || |||||||||| || Sbjct 203074 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 203015 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 203014 TTGACGAAGATCTGCATG 202997 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| || || ||||| ||||| ||| Sbjct 203734 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 203675 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || |||||| |||| | |||||| ||||||||||| Sbjct 203674 AGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGGAGGA 203615 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | || | ||| || | ||||||| Sbjct 203614 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 203555 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || || || || || || ||||| Sbjct 203554 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 203508 >seq8 Length=806155 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||| || || || || ||||||||||| Sbjct 255483 ATCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTT 255424 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 255423 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 255364 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 255363 GGTCTTGCCCGTCAGGGTCTTCACGAAA 255336 >seq10 Length=724679 Score = 98.7 bits (108), Expect = 9e-16 Identities = 241/362 (67%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||| || || || ||||||||| ||||| | || || || || ||||| || Sbjct 715541 ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGAC 715482 Query 47283 TTTGCCTGTCTCTACTAC----AACACTAGAGTCGATCAA--AAGTTGGACGTGCCCACC 47336 |||||||| ||| | || | | | || |||| | | ||| | || | Sbjct 715481 TTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGA---TGATC--- 715428 Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 ||| || || || | || |||||| |||||||| |||||| || | |||||||| Sbjct 715427 --CAG-GATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTT 715371 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 ||| | | | || |||||| | || | |||| ||||||| || || ||||| Sbjct 715370 CCCTGCGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCT 715311 Query 47457 GACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAG 47516 || || || || || ||| | ||| ||||| | || || || ||||| Sbjct 715310 GATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGAC 715251 Query 47517 TTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAA 47576 || ||| | ||||| || |||| |||||||||||||| ||||||||||| || | ||| Sbjct 715250 TTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 715191 Query 47577 TA 47578 || Sbjct 715190 TA 715189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493869575840