Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10 183 3e-41 seq39 118 1e-21 seq8 114 1e-20 seq22 109 5e-19 >seq10 Length=724679 Score = 183 bits (202), Expect = 3e-41 Identities = 375/553 (68%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| |||||||| || | ||||| || | || ||||| |||||| ||| |||| Sbjct 715473 GCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 715532 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| || || || |||||||| || || | |||||| || ||||| Sbjct 715533 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAA 715592 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC--TTTGCTG 133071 || ||||| || || |||||||| || || |||| | | || | || || | | ||| Sbjct 715593 GATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTG 715652 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131 |||||| || | ||||| |||||||| | | || ||| || || || || |||||| Sbjct 715653 --GATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCG 715710 Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAAT 133189 || | | | | || ||| || || | | ||||||||| ||||| || | Sbjct 715711 TT--AAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGT 715768 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 | | || ||||| | ||||||||| ||| || |||||||| ||||| || |||||| Sbjct 715769 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 715828 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | ||| || || | ||| |||||||| || || |||||||| || || || | Sbjct 715829 GGATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACG 715888 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CT 133366 | ||||| || || || | ||| || ||| |||| | | | ||| ||| | Sbjct 715889 CAGCGAAGAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGT 715948 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||| | |||||||| || || | |||||| | ||||| || || ||||| | Sbjct 715949 TCCAGTCATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 716008 Query 133427 CTTTTTTGTACAT 133439 | || |||||||| Sbjct 716009 CCTTCTTGTACAT 716021 >seq39 Length=350926 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 69918 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 69977 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| | || Sbjct 69978 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 70036 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | || ||||| ||||| || || | |||||||| | |||||| Sbjct 70037 CCAGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 70096 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| || || Sbjct 70097 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 70135 >seq8 Length=806155 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 255337 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 255396 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 255397 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 255456 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 255457 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 255516 Query 38433 G 38433 | Sbjct 255517 G 255517 >seq22 Length=541522 Score = 109 bits (120), Expect = 5e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || |||||| | || Sbjct 203508 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 203567 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || |||| ||||| ||||| ||||| |||| | Sbjct 203568 GATACCATTGATAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 203625 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| ||||| || || || || | || || || |||||||| Sbjct 203626 AACAGCGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACA 203685 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || |||||| | || || || ||||| || ||| Sbjct 203686 ACATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGT 203723 Score = 104 bits (114), Expect = 2e-17 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || |||||| ||| Sbjct 203736 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 203795 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | ||||| ||||| |||||| | || | Sbjct 203796 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATC 203853 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || || ||| |||| || | |||||| | | |||||||| Sbjct 203854 AGCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACA 203913 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 203914 ACATCCAGAAGGA 203926 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 ||| |||| || || ||||| ||||| |||||||| | || |||||| | |||| | | Sbjct 203286 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 203345 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | |||| ||| || | || || ||||| || || | ||||| ||||| Sbjct 203346 ATCGACAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGC 203405 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | || || || || || || |||| || ||||| |||||||||||| || Sbjct 203406 CTGATCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAG 203465 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| | || || ||| | || || || Sbjct 203466 AAGGAATCTACCCTTCATCTCGTCCTCCG 203494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165509981440