Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5 242 5e-59 seq14 167 3e-36 seq56 93.3 5e-14 seq37 86.0 8e-12 >seq5 Length=990607 Score = 242 bits (268), Expect = 5e-59 Identities = 432/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| | ||||| || |||||||| Sbjct 792619 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCGAAGATACCC 792678 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || ||||||||||| || || || ||||| ||| Sbjct 792679 TCCTCAATGGTAAGGAGAGAAACATCGAAAGTACCACCACCAAGATCGAAGATGAGGACG 792738 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || || || Sbjct 792739 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 792798 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || ||| ||| || || || || | ||||| || || ||||| || Sbjct 792799 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTAGCTTGACGC 792858 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||||| |||||||| ||||| || || || |||| |||| ||| ||||| Sbjct 792859 TGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCGAGG 792918 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || | ||| | || ||||| || | | Sbjct 792919 TAAGACTCGGCGGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTG 792978 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || || ||||| || || |||| ||| || | | | Sbjct 792979 AAGGTCTTGGTCTCGCCCTTGAACTCAACCTCGATGTTGGGCTTA---CCACCCTTGTCG 793035 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | ||| | | | | ||||| ||| | ||||||| | || | ||||| | Sbjct 793036 ACGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGA 793095 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| || || || || ||||| | |||||||||||| ||||||||| Sbjct 793096 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATGGCGACTTGGTTCTTG 793155 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || ||||| | || ||||| ||| Sbjct 793156 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 793212 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || |||||||| || || || || Sbjct 793213 CGGTTACCCTGGTCGTTGGCGATGATATC 793241 >seq14 Length=654374 Score = 167 bits (184), Expect = 3e-36 Identities = 368/545 (68%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| || ||||| ||||| | ||| || | |||||| | | || Sbjct 599225 AGGTCCTCGAAACGGGCGCGGGTGATGGACATGGTGAAGTCCTCACCGTCGAAGAGAGAG 599166 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| | || ||||| || |||||||| | Sbjct 599165 TCAATCTCAATGGTGGCCTGAGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAG 599108 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || |||||||| | | || || | || ||||| || || Sbjct 599107 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTCGTCTTTCGGC 599048 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 ||||| | | |||| |||| |||| | | |||||||| | ||||||||||| Sbjct 599047 CGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGTCCACCCAAGTGG 598989 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 ||||| || ||||| || ||||| |||| ||| || | ||||| | | || ||| Sbjct 598988 GTATCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACA 598929 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | ||||| ||||| || | ||| | |||| Sbjct 598928 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTA 598872 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| || || || || || || || || || || ||||| || | Sbjct 598871 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACG 598812 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || || || || ||||| |||||| Sbjct 598811 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 598752 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | ||| ||||| ||||| | | || || || || Sbjct 598751 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 598692 Query 7775 TTCAT 7779 ||||| Sbjct 598691 TTCAT 598687 >seq56 Length=271276 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 25046 ATCGAAATCCTCACCACCGAGATGAGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 24987 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 24986 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 24930 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 24929 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 24871 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 24870 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 24811 Query 7695 GTTG 7698 | || Sbjct 24810 GCTG 24807 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || | Sbjct 24746 CGTTGAAGTAGGCAGGGACGGTGACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 24687 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| ||||||||| | || ||||| |||| | ||||| | Sbjct 24686 CGGCGACCTCCTTCATCTTGCCAAGAACCATAGCAGAGATCTCCTCAGGAGTGAACTGCT 24627 Query 7824 TC 7825 || Sbjct 24626 TC 24625 >seq37 Length=362644 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGA 22549 ||||||||| || | || | || ||||| ||||||||||| || | || ||| Sbjct 128359 CTCCACAAACAGAGGAGACCTCCTTCCACCCGGTTTCACCATATGCTGTTACCAAGTTGT 128300 Query 22550 TGGGATATTGGGCGACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTA 22609 | ||| ||| | || || || | | |||| ||||||| | ||| | ||||||| Sbjct 128299 TCCAATACTGGACTACTGTCAACTTTCGAGAGGCATACGGCTTCCATGCCTCGAATGGTA 128240 Query 22610 TAATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAAC-A 22668 | | |||||||| |||||||||||||||||| | ||||| || ||||| || || | Sbjct 128239 TTCTCTTCAACCATGAATCACCGAGACGGGGTACCACTTTCGTCACCCGAAAGATCACTA 128180 Query 22669 CTC-GGTGTCGCTAATATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGA 22727 ||| || | |||| | ||| || || | | | || | ||| || || || | Sbjct 128179 CTCAAGTAGCTTTAAT-TGCCTGC-GGAAAGTTAGACTTCTTCTCCCTAGGGAATCTGAA 128122 Query 22728 TGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAA 22767 ||| ||||||||||| |||||| |||||| || || Sbjct 128121 CGCGGTTCGAGATTGGGGCCATGCAAAAGATTACATGCAA 128082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635123542939440