Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14 203 4e-47 seq10 125 8e-24 seq119 82.4 9e-11 >seq14 Length=654374 Score = 203 bits (224), Expect = 4e-47 Identities = 1133/1781 (64%), Gaps = 53/1781 (3%) Strand=Plus/Minus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| || || |||| | || || |||||||| || ||| Sbjct 285587 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 285528 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669 ||||| || | ||||| || | || | |||||| | || |||| ||| || || Sbjct 285527 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATTGTGGGGTC 285469 Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727 || |||| | |||| ||| |||| | ||||||||| ||| || | || ||| Sbjct 285468 TTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 285411 Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 || | || ||| | | ||| ||||| || || || ||| ||||| ||| Sbjct 285410 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCG 285351 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844 | ||||| | | || || ||||| ||||| | | || ||| || | | |||| Sbjct 285350 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 285294 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 ||| | | |||||| ||||| || | || || |||| || |||||||| | Sbjct 285293 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 285234 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 ||||| || ||||| | || | |||||||| | |||||||| || ||||| Sbjct 285233 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 285174 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 285173 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 285114 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 106079 ||||| | || | | ||||| ||||| ||| | |||||||| || | | Sbjct 285113 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 285057 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | || || || |||| |||| || || || || | || | || | ||| ||||| | Sbjct 285056 GAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTT 284999 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 106198 || || |||| ||| | | | ||||| | ||| | || |||| ||| Sbjct 284998 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 284940 Query 106199 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 106258 || || ||||| || ||||| | || | ||| || || ||| || || | Sbjct 284939 TGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGC 284880 Query 106259 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 ||| || | || || |||| || || || |||||||| | ||| || |||| ||| Sbjct 284879 ATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCGATGGGTCGGTG 284821 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 106377 ||||| ||| || || || || || || || || || |||| ||| Sbjct 284820 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 284761 Query 106378 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 106436 || || |||||| || ||| | || || || || | | ||| | || || Sbjct 284760 CAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCATA---GCAAG 284705 Query 106437 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 ||| || | ||| | || || || | || || | ||||| ||||| || Sbjct 284704 CCTCATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCT 284645 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 | || | |||||| | |||||| || |||| |||||| || || || || | Sbjct 284644 CGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGA 284585 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || | Sbjct 284584 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 284525 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGG-TACAATGGCGTT 106671 |||| ||||| | || ||||| || | ||| | | | | | || | || | ||| Sbjct 284524 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGA- 284466 Query 106672 GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 106730 ||| | |||||| |||||||||| ||| || || || |||||||| || || Sbjct 284465 --CCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAACAGT 284408 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCC 106790 ||| ||| || || || || || || | || | ||| | || || ||||| | Sbjct 284407 CGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACAC 284348 Query 106791 GCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTCTA-CACCGAGCCT 106847 ||||||||||||| || || ||||| |||| | |||||| || | ||| || ||| Sbjct 284347 GCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGG--TCACGGGCACGGA-CCT 284291 Query 106848 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 | || | ||| ||||| || | ||||||||||| | || ||| | |||||| |||| Sbjct 284290 CCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCT 284231 Query 106908 CAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTG 106964 | || |||| || | || || ||| ||| | || | |||||||| || | Sbjct 284230 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAG 284171 Query 106965 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 107024 || ||| || || |||||||| |||| || ||| | ||| ||| || || || || Sbjct 284170 TGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCAA 284111 Query 107025 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 107084 | || | | || | | | || | || || |||||||| |||||| ||| | Sbjct 284110 TGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGG 284051 Query 107085 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 107144 |||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 284050 AGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATAT 283991 Query 107145 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 107204 | | | ||||||| |||| || || || || || || |||||||| || || | Sbjct 283990 CAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAG 283931 Query 107205 TTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAAT 107262 || || |||| | | || ||||||| || ||||||||||||||| || || Sbjct 283930 AGGCATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGAT 283873 Query 107263 GTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || || || | | ||||||||| | ||||| Sbjct 283872 ATCATCACCCCAAATACCAACAGACACACGCATGATCATGT 283832 >seq10 Length=724679 Score = 125 bits (138), Expect = 8e-24 Identities = 334/504 (66%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| ||| | ||| ||||| ||||| Sbjct 715189 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 715248 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 117099 ||||| || || || | || || ||| | | || || | | || ||| Sbjct 715249 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 715302 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 |||||||| | || |||||||||||| ||| ||||||||||| |||| || Sbjct 715303 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 715362 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || || || || |||| | | |||||| || || || | | ||| Sbjct 715363 GCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 715422 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | ||||| | | | ||| | | || | || | || ||| || |||| Sbjct 715423 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 715479 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| ||||||||||| || || || || || || |||||| || || ||| Sbjct 715480 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 715539 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||| Sbjct 715540 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 715599 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCA 117455 || ||| || || |||| || |||| ||| |||||| ||| | || | | | ||| Sbjct 715600 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 715658 Query 117456 TTTCATTGCCCATTTCGCCTTCTT 117479 | || ||||| | |||||||| Sbjct 715659 TCGGATGGCCCAGTCGGCCTTCTT 715682 >seq119 Length=109673 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 94447 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 94388 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || ||| |||| || || | ||||| ||| | |||||||| || || Sbjct 94387 GTGTCATCGATGCCGATTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 94328 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 94327 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 94275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589972201029840