Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq47 116 4e-21 >seq47 Length=312199 Score = 116 bits (128), Expect = 4e-21 Identities = 318/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 154629 CAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA--ATCCAAGCATACC 154686 || || ||| | || |||||||||||| ||| || || | || ||| | || |||| Sbjct 266538 CAGCCCAACTCTGGTGCACAGGGTGAGTTTGCTGGTCT--TCGCTGTATCAAGGCTTACC 266595 Query 154687 ATCAAGGATCAGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGA 154745 | | ||| || || | ||||| |||| || || | || || | || || || || Sbjct 266596 A-CGAGGCTCGTGATGGAGATAAGCGAAAGGTCTGCCTTATCCCTGTTTCGGCTCACGGT 266654 Query 154746 ACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT 154805 || || |||||| ||||| |||||| || ||||| ||||| |||||||||||| | | Sbjct 266655 ACCAACCCTGCTTCTGCTGCCATGGCTGGTATGAAGGTTGTTACTGTCAAGTGTGACGGT 266714 Query 154806 GA---TGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAA 154862 | ||| ||| | || ||| | ||||| || || ||| | | | |||| Sbjct 266715 AAGACTGGCAACCTGGATATCGAGGATCTGAAGGCCAAGTGTGTCAAGCACGCTGATGAA 266774 Query 154863 CTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGA 154922 || | ||| ||| |||| || || ||||| ||||| || || || | || | Sbjct 266775 CTTGCTGCTATCATGGTTACCTATCCCTCTACTTTCGGTGTCTTCGAGCCTGAGATCAAG 266834 Query 154923 CAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 || | ||| | | || || || |||| |||| || || | || || || || | Sbjct 266835 CAAGTCTGTGATCTTGTCCACGAGCATGGCGGTCTCGTCTACATGGACGGTGCCAACATG 266894 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAAC 155042 || || ||| | || || | || |||| |||||| ||||| || ||||| ||| Sbjct 266895 AACGCCCAGATCGGTCTTTGCAGCCCCGGTGATATTGGTGCTGATGTTTGCCATCTCAAC 266954 Query 155043 TTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGT 155102 | || || || ||||||||||| || || || || ||||| || || || ||||| | | Sbjct 266955 CTCCACAAGACCTTCTGTATTCCCCACGGCGGCGGTGGTCCCGGTGTTGGCCCTATCGCT 267014 Query 155103 GT 155104 || Sbjct 267015 GT 267016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579204357973440