Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10 154 2e-31 seq14 136 6e-26 seq97 114 2e-19 seq2 98.7 2e-14 >seq10 Length=724679 Score = 154 bits (170), Expect = 2e-31 Identities = 233/328 (71%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| || ||||||||||| || ||||| Sbjct 715494 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 715553 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| || ||| ||||| ||||| || || || || Sbjct 715554 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 715613 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||||| |||| |||||| | | | ||| | | |||||| || ||||| Sbjct 715614 AGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCCCA 715670 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || ||||| || | | |||| | || || |||||| |||||||| ||| | || Sbjct 715671 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCG-CT 715729 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | || ||||||| ||||||||| ||||| || ||||||||||| ||||||||||| | Sbjct 715730 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCT 715789 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||||||| || ||||| Sbjct 715790 CCATCATGATCTGGAAGCCGTAGAAGCA 715817 Score = 118 bits (130), Expect = 2e-20 Identities = 181/257 (70%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| |||| Sbjct 715173 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 715232 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||||| | | ||| ||||||| || || Sbjct 715233 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAG 715292 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 || |||| || || || |||||||| ||||||||||| ||||||| | | |||||| Sbjct 715293 CGCGACAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCAT 715352 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||| || || ||| || | ||| ||| ||||| | ||| || |||||| || Sbjct 715353 GCCGAGAAGGGCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATC 715412 Query 794132 GATGATGATCTGCCTGG 794148 | ||||| | ||||| Sbjct 715413 AGTAATGATAT-CCTGG 715428 >seq14 Length=654374 Score = 136 bits (150), Expect = 6e-26 Identities = 185/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| ||||| || ||||| || |||| ||||| || Sbjct 284190 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 284131 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| ||| | || || | |||| || | ||| Sbjct 284130 TGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGGCC 284071 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 284070 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 284011 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | ||||| Sbjct 284010 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 283951 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| |||||||||||||| Sbjct 283950 GGCGTTGAAGAGCGTGGG 283933 >seq97 Length=144828 Score = 114 bits (126), Expect = 2e-19 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || ||| | || |||||||| || || ||| | | Sbjct 39438 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 39379 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| ||||| || ||||||||||| || ||||| | | ||| Sbjct 39378 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAGACTTTCAACATTACGAACG 39328 >seq2 Length=1160683 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 1147139 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 1147198 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | ||||||||||| |||| Sbjct 1147199 GATGAGGCGGACAGAAGTCTGGATCTCTCGGG 1147230 Score = 86.0 bits (94), Expect = 1e-10 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 || ||||| || | | ||||||||||| |||||| || | || |||| || ||||| Sbjct 174427 GGGCGCCATAAACTTGTTATCCTCGATGAAGCCGACAGCATGACTTCGGGTGCTCAGCAA 174368 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 ||||| || || ||||| | ||| ||||||| || || || || | ||||||||| Sbjct 174367 GCCCTTAGACGAACTATGGAGATCTACTCCAACACTACACGATTCGCTTTTGCCTGCAAC 174308 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATC 2019368 ||| | | |||||||| ||||||| || ||||||||| Sbjct 174307 CAGTCCAACAAGATCATCGAACCCCTCCAATCACGATGCGCCATC 174263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916122367261874