Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq14 250 2e-61 seq39 136 4e-27 seq22 118 1e-21 seq8 104 2e-17 >seq14 Length=654374 Score = 250 bits (276), Expect = 2e-61 Identities = 1009/1568 (64%), Gaps = 45/1568 (3%) Strand=Plus/Minus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | | || || ||||| ||||| || ||||| || || Sbjct 285269 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 285210 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | |||| || | || || || ||||||||||||||| |||||| | | Sbjct 285209 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 285150 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | ||||| ||| || | ||| | | || | | Sbjct 285149 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 285090 Query 148413 TTGCGCTTCA-GAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 | | || | ||| | ||||||||||||| || || | ||||||||||||||| | Sbjct 285089 TC-CTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATGTCGAA 285031 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||| || || || |||||| || | | | | | ||| || || | | || Sbjct 285030 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 284971 Query 148532 CGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | ||| | || ||| || ||| |||||| |||||| || ||| ||| Sbjct 284970 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 284912 Query 148591 TGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||| ||| ||| | ||| | ||||| ||||| | || || |||| Sbjct 284911 TGAGCTCACGAGCC---TCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGG 284855 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 |||||||||| || || | || ||||| ||||| ||||| | ||| || || Sbjct 284854 CAAGGCCCTGAACACCAAGACCGATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCT 284795 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || || |||||||| ||||||||||||| || ||||| | || |||| | | Sbjct 284794 GGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGA 284735 Query 148768 TTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TAC--GATGCATCGGTTCACGG 148821 || ||| | | || || || | | ||||| || |||| | | || | Sbjct 284734 CCTTGTGCAACTTCTTGAAGTCATAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAG 284675 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 | | |||||| || ||||| || || ||| || ||||| | |||||| | || || | Sbjct 284674 CCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAG 284615 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 |||||| ||| || | ||| || | ||||||||| |||||||||| |||||| | Sbjct 284614 TGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGG 284555 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA---ACC 148998 | |||||||| |||||| | || || || || ||| | || | ||| ||| Sbjct 284554 CATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACC 284495 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT------CCTGCTCGTA-- 149050 | || | ||| || |||| | || | |||||||| ||| |||||| Sbjct 284494 AA---AGTTTCTGAGC-----CTTGATAGTCTT-GCGACCCTTGCCCTCCTTCTCGTACT 284444 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 | ||| | |||| |||||| |||| ||||| || ||| |||| || ||||||| || Sbjct 284443 TTTCGTACAGAGCC--TCGAACTCCTCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTT 284386 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 |||||||| |||| ||| |||||| | | || |||||||| || ||||| || | Sbjct 284385 AGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGAT 284326 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 ||| || ||| | ||||| || || | || || || ||| || || Sbjct 284325 CCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAG 284266 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 284265 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 284206 Query 149291 GCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||||| || ||||||||||| | ||| | ||||||| || || |||| |||||| Sbjct 284205 TCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 284146 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTT 149407 ||| || | | || ||||| ||| | |||| ||| || || | Sbjct 284145 AACAACACCGTTCGATGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACG 284086 Query 149408 GTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCG 149466 ||||||||| | ||| || || || ||| | ||| ||||| || ||| ||| | Sbjct 284085 GTGCACGTTCAGGCCAATACCACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGAG 284027 Query 149467 TCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTT 149526 | |||||| ||||| || |||||| |||||| | || ||||| || ||| || Sbjct 284026 TATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATT 283967 Query 149527 GCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGG 149585 | || | | |||||||| ||| | ||||| ||| ||||| || |||| |||| Sbjct 283966 GGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGG 283907 Query 149586 CTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCG 149645 ||||| | ||| | ||| | || || || || ||||| || || || | | Sbjct 283906 -ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGAC 283848 Query 149646 ACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG 149705 || ||||| | ||| ||||| || ||||| | | || |||| ||||| | ||| Sbjct 283847 ACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAT 283788 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATG 149765 || | |||||| |||||||||| | ||| | || |||||| | | | ||||| Sbjct 283787 GATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATG 283728 Query 149766 GCGGCGTC 149773 || | ||| Sbjct 283727 GCAGAGTC 283720 >seq39 Length=350926 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 70118 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGC 70060 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 70059 CAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 70000 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 69999 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 69940 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 69939 TCTTGACGAAAATCTGCAT 69921 >seq22 Length=541522 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 203194 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 203135 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | || |||||||| || || ||||| |||||||| ||||| |||| Sbjct 203134 GCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 203075 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || |||| ||||| ||| |||||||||| || Sbjct 203074 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 203015 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 203014 TTGACGAAGATCTGCATG 202997 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || | |||||| || Sbjct 203932 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAACTGCTTACC 203874 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || || || || |||||||| ||||| ||| Sbjct 203873 AGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTT 203814 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| ||| ||| || || | ||||| ||| || ||||| ||||| Sbjct 203813 CACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 203754 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 203753 CTTCACAAAAATCTGCAT 203736 >seq8 Length=806155 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || || ||||| ||||| || || ||||| |||||| Sbjct 255482 TCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 255423 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 255422 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 255363 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 255362 GTCTTGCCCGTCAGGGTCTTCACGAAA 255336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413754141840