Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14 230 3e-55 seq10 129 7e-25 seq119 82.4 1e-10 >seq14 Length=654374 Score = 230 bits (254), Expect = 3e-55 Identities = 1141/1786 (64%), Gaps = 47/1786 (3%) Strand=Plus/Minus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| || ||| Sbjct 285587 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 285528 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | || | |||||| | || |||| ||| || || Sbjct 285527 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATTGTGGGGTC 285469 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 || |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 285468 TTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 285411 Query 110501 ATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560 || | || ||| | | || |||||||| || ||| ||| ||||| ||| Sbjct 285410 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCG 285351 Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATA 110620 | ||||| | | || ||||| |||||||| | | | ||| | | ||||||| Sbjct 285350 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATA 285291 Query 110621 TCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACA 110680 | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 285290 GCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGG 285231 Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||| ||||| | || |||||||||| | ||||| || || ||||| || Sbjct 285230 AACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCG 285171 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || || |||| || || | ||| ||| || ||||| || || | | ||||||||| Sbjct 285170 TTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTA 285111 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--AGCT 110855 || | || | ||||| ||||| ||| | |||||||| || | || Sbjct 285110 CGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG 285054 Query 110856 TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAA 110915 || || || |||| ||||||| ||||| || | || | || ||||| ||||| | | Sbjct 285053 -GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGA 284996 Query 110916 AGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGA 110974 |||| |||| ||| | | | ||||| | ||| | || |||| ||||| Sbjct 284995 AGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGTGG 284937 Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034 || ||||| || ||||| | || | ||| || || ||| || || | | Sbjct 284936 TAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 284877 Query 111035 CGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 || || | || || |||| || || || |||||||| | ||| || |||| ||| || Sbjct 284876 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCGATGGGTCGGTGGCG 284818 Query 111094 CATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 111153 ||| ||| || || || || || || || || || |||| ||| || Sbjct 284817 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 284758 Query 111154 ATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGTCT 111212 || |||||| || ||| | || || || || | | ||| | || || || Sbjct 284757 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCATA---GCAAGCCT 284702 Query 111213 CTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 | || | ||| | || || || | || || | ||||| ||||| ||| | Sbjct 284701 CATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGT 284642 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 | | |||||| | |||||| || || | |||||| || || || || | | Sbjct 284641 CAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGT 284582 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 |||||||||| ||||| |||||| |||||||||||||||||| | || | || |||| Sbjct 284581 TCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCT 284522 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGC 111447 | ||||| | | ||||| || | ||||| || | | | || || | || | | Sbjct 284521 CAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGC---GAC 284465 Query 111448 CCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG 111506 || | |||||| |||||||||| ||| || || || |||||||| || ||||| Sbjct 284464 CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAACAGTCGG 284405 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCT 111566 ||| || || || || || || | || | ||| | || | ||||| |||| Sbjct 284404 CGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCT 284345 Query 111567 TCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTT 111623 |||||||||| || || ||||| ||| || |||| || || | ||| || |||| | Sbjct 284344 TCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGGCACGGA-CCTCCT 284288 Query 111624 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | | ||| ||||| || | ||||||||||| | || ||| | |||||| ||||| | Sbjct 284287 CTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGA 284228 Query 111684 GATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGG 111740 | |||| || | || || ||| ||| | || | |||||||| || ||| Sbjct 284227 GGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGT 284168 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 111800 ||| || || |||||||| |||| || ||| | ||| ||| || || || ||| Sbjct 284167 TGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCAATGT 284108 Query 111801 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 111860 || | | || | | | || | || || |||||||| |||||| ||| |||| Sbjct 284107 AGGAGCCAGTAGCACGGATACGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGGAGA 284048 Query 111861 TTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGA 111920 | ||||| | | ||||| | ||||| || | || ||| ||||| | | | Sbjct 284047 TCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAA 283988 Query 111921 TAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTG 111980 | ||||||| |||| || || || || || || |||||||| || || | | Sbjct 283987 CCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGG 283928 Query 111981 CGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 112038 | || |||| | | || ||||||| || ||||||||||||||| || || || Sbjct 283927 CATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATC 283870 Query 112039 TTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || | | || ||||||| ||||| ||| ||| Sbjct 283869 ATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGG 283824 >seq10 Length=724679 Score = 129 bits (142), Expect = 7e-25 Identities = 529/819 (65%), Gaps = 29/819 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| | ||| ||||| ||||| Sbjct 715189 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 715248 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484 ||||| || || || | || || ||| | | || || | | || ||| Sbjct 715249 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 715302 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || |||||||||||| ||| ||||||||||| |||| ||| Sbjct 715303 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 715362 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || || || || || || |||| | | |||||| || || || | | ||| Sbjct 715363 GCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 715422 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | ||||| | | | ||| | | || | || | || ||| || |||| Sbjct 715423 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 715479 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| ||||||||||| || || || || || || |||||| ||||| ||| Sbjct 715480 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 715539 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||| Sbjct 715540 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 715599 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCA 122840 || ||| || || |||| || || | ||| |||||| ||| ||| | | | ||| Sbjct 715600 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 715658 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 | || ||||| | |||||||| || || || | || | ||||| | ||| | Sbjct 715659 TCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAG 715718 Query 122901 CT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGC 122959 | | ||| | | ||||| ||||| ||||||| | || || || ||| Sbjct 715719 GTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGG 715777 Query 122960 CATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGA 123018 || | | | ||| ||| | || | ||||||| | || || ||| ||||| Sbjct 715778 AGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAACGAGCCTCGGGGATCTGG 715836 Query 123019 ACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 123077 ||||| || | ||| | | || ||||| ||||| ||||| ||| |||| || Sbjct 715837 ACCTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAA 715895 Query 123078 GAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTC 123134 ||| || ||||||| | ||| || |||| || ||| || | |||||||| Sbjct 715896 GAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTC 715955 Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | ||||| ||||| | ||||| || || |||||||| Sbjct 715956 ATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 715994 >seq119 Length=109673 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 94447 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 94388 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || || | ||||| ||| | |||||||| || || Sbjct 94387 GTGTCATCGATGCCGATTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 94328 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 94327 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 94275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022846433600