Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 219 5e-52 >seq14 Length=654374 Score = 219 bits (242), Expect = 5e-52 Identities = 519/775 (67%), Gaps = 22/775 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | ||||| ||||| || | ||| ||| Sbjct 283825 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 283884 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| ||| || | ||| | || | ||| || || ||| | || || || ||| Sbjct 283885 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTTC 283944 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || || ||| || || |||| |||||| |||| | |||||||| ||| Sbjct 283945 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 284004 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || || |||||||| || |||||| |||||| ||||||||| | | ||| Sbjct 284005 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 284064 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| || | || ||| | | | ||||||| | ||| | || || || | Sbjct 284065 GGTATTGGCCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTACATTGCCGGTACCA 284122 Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 |||| | ||| | || | || |||||||| || |||||||||||||| || || || Sbjct 284123 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 284180 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| |||||||||| ||||| || | || ||||||||||||||||| ||||| Sbjct 284181 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 284240 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 | | || | | ||||| || || || ||| ||| || ||| | || ||| | || Sbjct 284241 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 284300 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||| || || || ||||| || || || |||||| | || || ||| | Sbjct 284301 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 284360 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774 || || ||| ||||||||||| ||||||||||| |||||| | | ||| ||||| | Sbjct 284361 CGGCGACTGGACGCTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGT-TACGGAG 284419 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828 ||||||| | | |||| | |||| | || | |||| ||| |||| Sbjct 284420 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 284473 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||| | | | ||| | || || || || |||| ||||| |||| | Sbjct 284474 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 284533 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | | |||| |||||||||| | |||| ||||||||||| |||||| |||| Sbjct 284534 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 284588 Score = 100 bits (110), Expect = 3e-16 Identities = 551/861 (64%), Gaps = 54/861 (6%) Strand=Plus/Plus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 |||||| | ||| | ||| | || | | ||||| | ||| ||||||||| | |||| Sbjct 284712 TGACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCAT 284771 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 ||| ||| ||||||| | | ||| ||||| ||| | || ||||| ||||| Sbjct 284772 CGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCAT 284831 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTCGAC 55273 || | ||||| |||||| | ||||| ||| | ||||| | |||||||||| Sbjct 284832 CGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCT--TGCTCTGCGCATGCCCTTCGAG 284889 Query 55274 TCGGAACCT--GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCG 55330 || | || ||||| || | ||| || | |||||| || | ||| ||| || || Sbjct 284890 TC--ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATTTACCACGCTGCC 284946 Query 55331 CTCGAGGAGTC-GTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTC 55389 ||| | || ||| || ||||||| | ||||| ||||| || ||| | ||| Sbjct 284947 CTCACTGCCTCCGTG-CAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTC 285005 Query 55390 GCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCAT 55443 || || |||| | ||||||||||| | ||| | |||| ||||||| | Sbjct 285006 CCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTG 285065 Query 55444 G---TTTGACA-------AGTTGAAG-CATGACATTCACTTGTGGGGCCTACGCAACTCC 55492 | | || | || |||| || |||| ||| ||| | || ||| Sbjct 285066 GGACTGGGAGACTCTTCGAGAGGAAGTCAAGACA--CAC------GGCATCCGTAACAGT 285117 Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 |||||| | || || ||||| || || || | ||||| |||||||||||||| Sbjct 285118 CTGCTCCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGC 285177 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612 |||||||| ||||| |||||||||||| || || || || |||||||| | Sbjct 285178 TTCGAGCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTT 285237 Query 55613 ATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCA 55670 ||||| || |||||||||| | || |||| ||| | || | Sbjct 285238 GTCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGT--CCGATGCTATGA 285295 Query 55671 AGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGC 55724 ||| || || |||| ||| || ||| | ||||| || | || ||| Sbjct 285296 AGAACCGCATCATTGCTGAGAATGGT---TCCATTCAGAACATTCCCAACATCCCTGCCG 285352 Query 55725 GTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG--AGTCTGATTGACAT 55782 | |||||| | || ||| || |||||||| | ||| |||| || | || Sbjct 285353 ATGTCAAGGCTCTGTATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCG--TTCAGAT 285410 Query 55783 GAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA 55842 | ||||||||| ||||| | ||| || ||||||||||| ||||||||| |||| | | Sbjct 285411 GGCTGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAAGA 285470 Query 55843 TCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902 || || ||| |||| | | | ||||||||| || |||||| || |||||||| Sbjct 285471 CCCCACAATGGGCAAGATCACCAGTATGCACTTTGCAGGCTGGAAGCTTGGCCTCAAGAC 285530 Query 55903 GGGTATGTACTATCTGCGGAC 55923 || |||||||| || || || Sbjct 285531 TGGCATGTACTACCTTCGTAC 285551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208024326800