Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F000733055.2_202015-06-08] 1,166 sequences; 50,550,233 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq14 163 4e-35 >seq14 Length=654374 Score = 163 bits (180), Expect = 4e-35 Identities = 552/851 (65%), Gaps = 14/851 (2%) Strand=Plus/Minus Query 77759 GATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAA 77818 ||| || || || || | |||||||||||| ||||| | ||||| || || || || Sbjct 284595 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 284536 Query 77819 CGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA 77877 || | ||||| ||| |||| | || | ||| | | ||| | | ||| ||| || | Sbjct 284535 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 284477 Query 77878 TCATAGATTTGTATCGCCT---CTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTC 77932 | || ||| | | | ||| | || || || ||| | |||| || || || Sbjct 284476 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACTC 284422 Query 77933 ATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACC 77992 ||||| || || | | |||||||| || || |||||||||| | |||||| || Sbjct 284421 CTCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCC 284362 Query 77993 ATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 | | | ||| || ||||| || |||||||| ||||| || || | || || || || Sbjct 284361 GTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACG 284302 Query 78053 GGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGA 78112 || | || || || || ||||| ||||| || ||||| | | |||||| Sbjct 284301 GGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGA 284242 Query 78113 ATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTAT 78172 ||||| || || || || || || | | | || ||||| || || || ||||| || | Sbjct 284241 GTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGAC 284182 Query 78173 ATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATT 78232 ||| | || ||||| || | || | | ||| |||| || |||||| ||||| || || Sbjct 284181 ATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTT 284122 Query 78233 TGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCC 78292 || || | ||| || ||| | || || ||| | | | || || || || Sbjct 284121 GGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGGCCAATACCACC 284062 Query 78293 TGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTC 78352 |||||||| || || | || || || | ||||||||||| ||||| |||||||| Sbjct 284061 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 284002 Query 78353 ATCCATCATGTTAA-GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 78411 ||| |||| | || ||||| || | |||| ||| | ||| || || || || | Sbjct 284001 GTCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCGTTGA 283943 Query 78412 ATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAG 78471 | | || ||||| ||||| || || |||| || | || |||||||| || | Sbjct 283942 AGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGA 283883 Query 78472 CTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTC 78531 || || || || ||| || || | |||||||| | ||| |||||||| | Sbjct 283882 CTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGC 283823 Query 78532 TTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAA 78591 || || ||||| | || || | | ||||||| |||||||| || || |||| Sbjct 283822 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 283763 Query 78592 AATAGTTGTAT 78602 | || | |||| Sbjct 283762 AGTATTGGTAT 283752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694658675202240