Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 178 2e-39 >seq2 Length=5316833 Score = 178 bits (196), Expect = 2e-39 Identities = 574/883 (65%), Gaps = 16/883 (2%) Strand=Plus/Plus Query 53785 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 53844 |||||| || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 1653298 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1653357 Query 53845 TGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT 53904 ||| | || || ||| |||||| || | ||| || | ||| | ||||||| || Sbjct 1653358 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGAT 1653417 Query 53905 TATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCAAACTCGTC 53961 || ||| | ||| | ||| ||||| | |||| || ||||| || Sbjct 1653418 ---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC 1653474 Query 53962 TCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 54021 ||| | | | | | ||||| || || | || ||||||| || ||| || |||| Sbjct 1653475 TCCATAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTT 1653534 Query 54022 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 54081 | | || || ||||| || |||||||| |||||||| || | || || || | || Sbjct 1653535 CTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGC 1653594 Query 54082 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 54141 || ||||| || || ||||| ||||| |||||| | | | |||||| || Sbjct 1653595 CCTGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTG 1653654 Query 54142 CCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 54201 ||| || || | ||| |||| | | | || || || ||||| || ||||| || | || Sbjct 1653655 CCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATA 1653714 Query 54202 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 54261 | ||| ||||| || | || | | ||| |||| || ||| || || | ||| ||||| Sbjct 1653715 GCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGT 1653774 Query 54262 CCCGGAGATATAGCTTCCACTGGCACGAATAT----TACTAATTGATAGACCTATCCCCC 54317 |||| || ||| ||| | ||||| ||| ||| || | |||| || || | Sbjct 1653775 ACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGTACG--TTCA--GACCAATACCAC 1653830 Query 54318 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 54377 | ||||| || ||||| | || || || | ||||| ||||| ||||| ||||| | Sbjct 1653831 CAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGT 1653890 Query 54378 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 54437 | ||| |||| | || | || || |||| |||| | || || || || || | Sbjct 1653891 CGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGA 1653950 Query 54438 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAG 54497 | | || ||||| || ||||| || |||| || | || ||||| ||||| | Sbjct 1653951 AGAGCGTGGGAGAGGCATGCGTGAAGAATTTGCTGGACATAAGGTTGTATGTCTCCAAGA 1654010 Query 54498 CTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 54556 || || ||||| || || | || || | |||||||| | |||||||||||| Sbjct 1654011 CTCGCTCAATATCATCACCCCAGA-TACCAACAGACACACGCATGATCATGTGCTGAGGG 1654069 Query 54557 CTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCA 54616 | || || ||||| || || || || | ||| ||| |||||||| || || ||| Sbjct 1654070 CGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCA 1654129 Query 54617 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 || || | |||| || || || || || | ||| | |||| Sbjct 1654130 AAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1654172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721458991120