Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 266 3e-66 seq2 123 3e-23 seq6 120 3e-22 >seq7 Length=3608416 Score = 266 bits (294), Expect = 3e-66 Identities = 550/809 (68%), Gaps = 16/809 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 1894226 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 1894167 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||| | | | |||| || || Sbjct 1894166 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTTGTCTC 1894108 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || || ||||| ||| || || || ||||||||||| || ||||| || Sbjct 1894107 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAACG 1894048 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 1894047 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 1893988 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || ||||| ||||| ||| | | || | Sbjct 1893987 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGC 1893928 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | | | | |||||||| ||||| || || ||| || | |||||| Sbjct 1893927 CCA--GCGAACCTACCTCT--TCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGG 1893872 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| | || |||||| | | || || |||| | | |||| || || | Sbjct 1893871 CCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 1893812 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| || || ||||| ||||||| || |||||| | || || ||||||| Sbjct 1893811 CCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCA 1893752 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||| ||||| ||| ||||||||||||||| | || |||| Sbjct 1893751 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 1893692 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || ||||||||||| | || | || | | || | ||| | Sbjct 1893691 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGC 1893632 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | || ||| ||| |||| || || ||| |||| |||||| ||||||||||| | Sbjct 1893631 AGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACCGAGG 1893572 Query 117288 CGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | | | || |||| || || || | || | || ||| ||| ||||| |||||| Sbjct 1893571 CTCTTCCCTGTGC-CCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTC 1893513 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| || | || || ||| || | | || ||| |||||| | ||||||| Sbjct 1893512 GTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCC 1893453 Query 117407 CTGGACTTTATGAACCTCATCT-CCTTGG 117434 | ||||| ||| | ||||| |||||| Sbjct 1893452 TTCGACTTCATGGAGAACATCTCCCTTGG 1893424 Score = 152 bits (168), Expect = 5e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 2834127 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2834068 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 2834067 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 2834009 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 2834008 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 2833949 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| |||| || || || || Sbjct 2833948 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 2833916 >seq2 Length=5316833 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 3771426 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 3771367 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || ||||| Sbjct 3771366 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 3771307 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || || ||| ||||||||||||||||||| Sbjct 3771306 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 3771247 Query 40879 G 40879 | Sbjct 3771246 G 3771246 >seq6 Length=4319897 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| || || | || Sbjct 3144187 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 3144246 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || |||| ||||| |||||||| ||| | |||||| Sbjct 3144247 GACACTATCGACAATGTTAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 3144306 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||| ||||| || |||| ||||||||| || |||||| Sbjct 3144307 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCTGATTACAAC 3144366 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| |||| || || || || Sbjct 3144367 ATTCAGAAGGAGTCCACTCTTCACCTTGT 3144395 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| ||||| ||||| ||||| |||||||| | || ||||| | |||| | | Sbjct 3144475 ATAGTCGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 3144534 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | ||||| ||| |||| ||||||||||||||||| | |||||||| || Sbjct 3144535 ATCGACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATCCCTCCTGACCAGCAGCGC 3144594 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || |||| || || || || || || || | || ||||| |||||||||||| ||| Sbjct 3144595 CTGATCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAG 3144654 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 ||||| | || || ||||| || Sbjct 3144655 AAGGAATCTACCCTTCATCTCGT 3144677 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || ||||| ||| Sbjct 3144925 ATGCAGATTTTTGTTAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 3144984 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| || ||| | || || Sbjct 3144985 GACACTATTGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 3145043 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||| |||| || | |||||| | | ||||||||| Sbjct 3145044 GCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAA 3145103 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 3145104 CATCCAGAAGGAGTCAACTCTTCACCTCGT 3145133 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| ||| | || ||||| | || Sbjct 3144697 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACCCTGGAAGTCGAGTCATCC 3144756 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | ||||| ||||| || || | || || Sbjct 3144757 GATACCATTGATAACG-TGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCA 3144815 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||||| ||| ||||| || || || || | || || || ||||||||| Sbjct 3144816 ACAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAA 3144875 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 3144876 CATCCAGAAGGA 3144887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219077635440