Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7 102 8e-17 seq6 98.7 1e-15 >seq7 Length=3608416 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||||||| |||| || | || |||||||| || || Sbjct 2833928 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGCC 2833986 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| || || ||||| || || || ||||| || ||||| ||| || || Sbjct 2833987 AGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 2834046 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||||||||||| ||| | |||||| || || | || Sbjct 2834047 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 2834106 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 2834107 CTTGACGAAAATCTGCAT 2834124 >seq6 Length=4319897 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || ||||| || |||||||| ||||| | |||| ||| || Sbjct 3144396 AACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTC 3144337 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || || || | |||| |||||||| ||||| || ||||| || ||||| | Sbjct 3144336 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-T 3144278 Query 139675 GATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | ||| | | || | ||||||| | ||| ||||| | ||| | |||| Sbjct 3144277 GAATCTTGGACTTAACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 3144218 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||| || || ||||| || ||||| Sbjct 3144217 TGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3144187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063882184800