Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 201 2e-46 seq7 114 2e-20 >seq2 Length=5316833 Score = 201 bits (222), Expect = 2e-46 Identities = 720/1105 (65%), Gaps = 32/1105 (3%) Strand=Plus/Plus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || ||||||||||| ||||| | ||||| || | || | ||| || ||||| Sbjct 1653269 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1653328 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 ||| || |||||||| || || ||||| || | || || ||| |||| | || | | Sbjct 1653329 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1653388 Query 79786 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TC 79841 || || | ||| | | || ||||||| || || |||| | ||| | ||| || Sbjct 1653389 ATGGCGTACCAAA-GCTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTC 1653444 Query 79842 GTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||| | | ||| | | | |||||||| ||||| | ||| | | ||||| || Sbjct 1653445 GTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCATAGCAGTCGGCAAGGCCAGGGCAC 1653502 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGAT 79957 |||| || ||||||| || ||| || || | || ||| || || ||||| || |||| Sbjct 1653503 TCGTTGGGGCACATCAGCGTCCAGTCACCGT--TCTTTTCAACACGCTTCATGAAAAGAT 1653560 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||| |||||||| || | || || || | || || |||||| || || |||| Sbjct 1653561 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTACCGTGGTTCT 1653620 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | | Sbjct 1653621 TACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 1653680 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || ||||| ||||| || ||||| || | || | ||| ||||| || | || | | Sbjct 1653681 CACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAA 1653740 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| |||| || ||| || || ||||| ||||| |||| || ||| ||| | |||| Sbjct 1653741 GCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCAC 1653800 Query 80198 GAATAT----TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 | ||| ||| || | |||| || || || ||||| || ||||| | || || Sbjct 1653801 GGATACGGTGTACG--TTCA--GACCAATACCACCAGCCATCTTGGAGATCATGGCACAG 1653856 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 || | ||||| ||||| ||||| || || || || |||| | || | || || Sbjct 1653857 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAA 1653916 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 |||| |||| | || || || || || || | || ||||| || ||||| || Sbjct 1653917 GATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGCGTGAAG 1653976 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAAT 80432 |||| |||| || ||||| ||||| | || || ||||| || || | Sbjct 1653977 AATTTGCTGGACATAAGGTTGTATGTCTCCAAGACTCGCTCAATATCATCACCCCAGA-T 1654035 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 || || | |||||||| | |||||||||||| | || || ||||| | || || Sbjct 1654036 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 1654095 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552 | | ||| ||| |||||||| || || ||||| || | |||| || || || || Sbjct 1654096 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTC 1654155 Query 80553 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACT 80612 || | ||| | |||| | | ||||||| | | || || ||| | || Sbjct 1654156 ATAGACAATGGCAGAGTCCAACTCCTCCTTATGTCGCATGAC-GCACTCATAAGTCTCCT 1654214 Query 80613 T-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC-CTC- 80669 | || || || || || | || || || || || ||||||| | | | || ||| Sbjct 1654215 TGGAGATCATGGGTGACGGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGAGGTCGCTCA 1654274 Query 80670 CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGC 80729 || || || || | || || || | |||||| || || || ||||| || | ||| Sbjct 1654275 CAACAGCGGAC--CATTGCTTCTTGGTCTGCTTGTGGAGGTTGGAGACGGCAATACGGGC 1654332 Query 80730 GGCTAAAATGGCATAATCTGGATGT 80754 ||| | |||||||| || |||||| Sbjct 1654333 GGCAAGGATGGCATAGTCGGGATGT 1654357 >seq7 Length=3608416 Score = 114 bits (126), Expect = 2e-20 Identities = 354/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| |||||||| || | | || || |||||||| || || || |||||||| || || Sbjct 1893684 GTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 1893743 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || || || || || | ||| |||||||| || || || || Sbjct 1893744 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 1893803 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCA-CTTTTGAG 50149 || |||||||| || | || || | || | | || || ||||| | || | Sbjct 1893804 AGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 1893862 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| |||||||||||| | || || || || || ||||| || ||||| ||| || Sbjct 1893863 CCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 1893922 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | || || | || || || || | || || | || || || |||| Sbjct 1893923 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 1893982 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 1893983 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 1894042 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 |||||||| | | || || || || || || ||| ||| || || || || | | Sbjct 1894043 TGAATCGTTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAAGGA 1894102 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || | ||| | || | || || | | || ||||| || | || ||| | Sbjct 1894103 TGTGAGAGACAAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCT 1894162 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 1894163 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1894222 Query 50507 AGAT 50510 | || Sbjct 1894223 AAAT 1894226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268629411160