Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 192 8e-44 seq7 105 9e-18 >seq2 Length=5316833 Score = 192 bits (212), Expect = 8e-44 Identities = 594/906 (66%), Gaps = 20/906 (2%) Strand=Plus/Plus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 |||||||||||||| || || | |||||| || | || | ||| || ||||| Sbjct 1653269 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1653328 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 ||| || |||||||| || || || || || | || || ||| |||| | || | | Sbjct 1653329 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1653388 Query 71869 ATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTC 71924 || || | ||| | | || |||||| | ||| ||||| | ||| || | || Sbjct 1653389 ATGGCGTACCAAAGCTTCT-GAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCTC 1653444 Query 71925 GTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACA 71981 ||| || ||| | | | |||||||| ||| || |||| | | | | ||||| || Sbjct 1653445 GTACTTTTCGTACAGAGCC--TCGAACTCCTCT-CCATAGCAGTCGGCAAGGCCAGGGCA 1653501 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039 || || || ||||||| | ||| || || | || ||| || || ||||| || ||| Sbjct 1653502 CTCGTTGGGGCACATCAGCGTCCAGTCACCGT--TCTTTTCAACACGCTTCATGAAAAGA 1653559 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| |||||||| || | || || || | || || |||||| || || ||| Sbjct 1653560 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTACCGTGGTTC 1653619 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | | Sbjct 1653620 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 1653679 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || ||||| || | || | ||| ||||| || | || | Sbjct 1653680 GCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGA 1653739 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| || ||| || || | ||| ||||| |||| || ||| ||| | ||| Sbjct 1653740 AGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCA 1653799 Query 72280 CGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 72339 || ||| | | ||||| || || || ||||| || ||||| | || || Sbjct 1653800 CGGATACGGTGTACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTC 1653859 Query 72340 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || | ||||| ||||| ||||| ||||| || ||| |||| | || | || || Sbjct 1653860 TTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGAT 1653919 Query 72400 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 72459 |||| |||| | || || || || || || | || ||||| || ||||| || || Sbjct 1653920 GACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGCGTGAAGAAT 1653979 Query 72460 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCC 72518 || |||| || ||||| ||||| | || || ||||| || | || || Sbjct 1653980 TTGCTGGACATAAGGTTGTATGTCTCCAAGACTCGCTCAATATCATCACCCCAG-ATACC 1654038 Query 72519 TACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 72578 || | |||||||| | ||| |||||||| | || || ||||| | || || | Sbjct 1654039 AACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAG 1654098 Query 72579 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 | ||| ||| |||||||| || || ||||| || | |||| || || || || || Sbjct 1654099 GAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATA 1654158 Query 72639 AATAAT 72644 | ||| Sbjct 1654159 GACAAT 1654164 >seq7 Length=3608416 Score = 105 bits (116), Expect = 9e-18 Identities = 352/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| ||||||||||| | | || | |||||||| || || || |||||||| || || Sbjct 1893684 GTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 1893743 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| || ||||| || ||||| || || | ||| |||||||| || || || || Sbjct 1893744 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 1893803 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCA-CTTTTGAG 42254 || ||||||| || | || || | || | | || || ||||| | || | Sbjct 1893804 AGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 1893862 Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314 |||| |||||||||||| | || || || || || ||||| || ||||| ||| || Sbjct 1893863 CCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 1893922 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 | || || | || || || || | || || | || || || |||| Sbjct 1893923 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 1893982 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 | || || ||||| || |||||||| || | ||||||| | ||| || || || Sbjct 1893983 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 1894042 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 |||||||| | | || ||||| || || || ||| ||| || || || || | | Sbjct 1894043 TGAATCGTTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAAGGA 1894102 Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATTGATATCTT 42551 || | ||| | | || || | || | || ||||| || | || ||| | Sbjct 1894103 TGTGAGAGACAAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCT 1894162 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | || || | ||||| || || || || ||||| || ||||| | || Sbjct 1894163 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1894222 Query 42612 AGAT 42615 | || Sbjct 1894223 AAAT 1894226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139040604440