Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 255 9e-63 seq2 141 1e-28 >seq7 Length=3608416 Score = 255 bits (282), Expect = 9e-63 Identities = 569/843 (67%), Gaps = 21/843 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| | ||||| Sbjct 1894226 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 1894167 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | || |||||| ||||| ||| | || Sbjct 1894166 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTTGTCTCT 1894107 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | || ||||| || | ||| ||||| || |||||||| || || || || ||| Sbjct 1894106 CACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGA-ACG 1894048 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGA 125256 |||| | ||| | || || |||| |||| |||| ||||| ||||| ||||||| Sbjct 1894047 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCAGATCATGA 1893989 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | ||||| || | ||||| || ||||||| ||||| || || | Sbjct 1893988 TGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCG 1893929 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | ||| | ||||| ||||| || || || | || | || || || ||||| Sbjct 1893928 CCCAGCGAACCTAC-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCC 1893870 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || || |||||| | || | | || || | ||| | | || || || Sbjct 1893869 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCC 1893810 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| || || ||||| |||||||| ||| || || | ||||| ||||||||| Sbjct 1893809 TTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAG 1893750 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || ||||||||||| ||||| | |||||| | || ||||| || ||||| Sbjct 1893749 AAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 1893690 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || ||| |||||||||| || || | ||| | | | | || | | || Sbjct 1893689 CTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGTCGTGCC 1893639 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 ||| | | | | || | || | || |||||||| | || || || ||||| || Sbjct 1893638 AGCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTC 1893579 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735 ||||| | || || | | | |||||||||| | || ||| ||||||| Sbjct 1893578 ACCGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATT 1893519 Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCC 125792 ||||| || || |||||||| || || ||||| || ||| | ||||| ||| Sbjct 1893518 GAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAAGGTCTACAAGGCC 1893462 Query 125793 AAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 | || ||||| || |||||| | ||| || || | |||||||||||||| |||||| Sbjct 1893461 ACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGTAAGACCAACTTCTTCGAG 1893402 Query 125853 AAG 125855 ||| Sbjct 1893401 AAG 1893399 >seq2 Length=5316833 Score = 141 bits (156), Expect = 1e-28 Identities = 307/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 1653705 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 1653646 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| | ||| | ||| Sbjct 1653645 GTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCAGGGCCCGTGAC 1653586 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | || || || ||| | || ||| | ||||||||||| || || |||||| Sbjct 1653585 CTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGTG-- 1653528 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || || |||| |||| || || ||| Sbjct 1653527 -ACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTATGGAGAGGAG 1653469 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 || ||||| |||| |||||| | |||||| | || |||| | || | || Sbjct 1653468 TTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGC 1653410 Query 97172 ACGAGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| || ||| | ||||| | ||| ||| ||| ||||| |||| || | ||| Sbjct 1653409 TC-AGAAGCTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATG 1653352 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | || |||||| || Sbjct 1653351 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGC 1653292 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||| |||||||| |||||| | |||||| Sbjct 1653291 TCCAACCTGTGCACTGAAATTATTGAGTAC 1653262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059023998440