Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 107 3e-19 seq7 104 4e-18 >seq9 Length=3114872 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | ||||| |||||||| || ||||||||||| ||||| Sbjct 1545715 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 1545657 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||| ||||| ||||||||| |||||| Sbjct 1545656 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATCTCTG 1545616 Score = 87.8 bits (96), Expect = 3e-13 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16539 TCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTT 16598 |||| || |||| || | ||| |||||| ||||||| || || |||| ||| || Sbjct 1545558 TCTACGAGGAGACCCGCGGTGTCCTGAAGACCTTCCTCGAGGGTGTCATCCGTGACGCCG 1545499 Query 16599 TCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCAT 16658 || ||| ||||||||||| || || ||||| ||||| || | ||| | ||||| || Sbjct 1545498 TCACCTACACCGAGCACGCCAAGCGCAAGACAGTCACATCTCTCGATGTTGTCTACGCCC 1545439 Query 16659 TGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| || |||||||| | | || ||||| || ||||| Sbjct 1545438 TGAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 1545398 >seq7 Length=3608416 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | ||||| ||||| ||||||||||||||||| ||||| Sbjct 1615242 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATTCAAGGAATCACCAAGCCCGCTAT 1615300 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| | |||| Sbjct 1615301 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 1615341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075182628167