Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 174 2e-38 >seq2 Length=5316833 Score = 174 bits (192), Expect = 2e-38 Identities = 692/1073 (64%), Gaps = 26/1073 (2%) Strand=Plus/Plus Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||| || || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 1653298 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1653357 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63090 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 1653358 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GCTTCTGAGCCTTGA 1653416 Query 63091 TTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATACAATCGTTCGAACTCG 63146 | || ||| | |||| | || ||||| | |||| |||||||| Sbjct 1653417 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCC 1653472 Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206 ||||| | | | | | ||||| || || | || ||||||| || ||| || ||| Sbjct 1653473 TCTCCATAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCG 1653532 Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63266 | | | || || ||||| || |||||||| |||||||| || | || || || | | Sbjct 1653533 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGG 1653592 Query 63267 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63326 | || ||||| || || ||||| ||||| |||||| | | | |||||| Sbjct 1653593 GCCCTGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAG 1653652 Query 63327 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63386 ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | Sbjct 1653653 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 1653712 Query 63387 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63446 || | ||| ||||| || | || | | ||| |||| || |||||| || |||| ||| Sbjct 1653713 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGACGTACCGTTG 1653772 Query 63447 GTACCGGAGATATAGCTTCCACTGGCACGAATAT----TACTAATTGATAGACCTATTCC 63502 ||||||| || ||| ||| | ||||| ||| ||| || | |||| || || Sbjct 1653773 GTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGTACG--TTCA--GACCAATACC 1653828 Query 63503 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCT 63562 || ||||| || ||||| | || || || | || || ||||| ||||| || || Sbjct 1653829 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACT 1653888 Query 63563 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 63622 || || |||| | || | || || |||| |||| | || || || || || Sbjct 1653889 GTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTT 1653948 Query 63623 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63682 || | || ||||| || ||||| || |||| || | || ||||| ||||| | Sbjct 1653949 GAAGAGCGTGGGAGAGGCATGCGTGAAGAATTTGCTGGACATAAGGTTGTATGTCTCCAA 1654008 Query 63683 AGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 63741 || || ||||| || || | || || | |||||||| | ||||||||||| Sbjct 1654009 GACTCGCTCAATATCATCACCCCAGA-TACCAACAGACACACGCATGATCATGTGCTGAG 1654067 Query 63742 GTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63801 | | || || ||||| || || || | | ||| ||| |||||||| || || | Sbjct 1654068 GGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGC 1654127 Query 63802 CAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 63861 |||| || | |||| || || || || || | ||| | |||| | | ||||||| Sbjct 1654128 CAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAACTCCTCCTTAT 1654187 Query 63862 ATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA 63920 | | || | ||| | ||| || || || || || | || || || Sbjct 1654188 GTCGCATGAC-GCACTCATAAGTCTCCTTGGAGATCATGGGTGACGGCCGGCCGTTCTTG 1654246 Query 63921 GGATTAACATAGTTGAATAAATC-CTC-CATCACTTCACTAAATAGtttttttGTTTCCT 63978 || || ||||||| | | | || ||| || || || || | || || || | || Sbjct 1654247 GGGTTCACATAGTGGTAGAGGTCGCTCACAACAGCGGAC--CATTGCTTCTTGGTCTGCT 1654304 Query 63979 TGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 |||| || || || ||||| || | |||||| || |||||||| || |||||| Sbjct 1654305 TGTGGAGGTTGGAGACGGCAATACGGGCGGCAAGGATGGCATAGTCGGGATGT 1654357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947052050040