Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01]
19 sequences; 46,178,503 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 1e-15
seq2 95.1 1e-14
seq7 84.2 2e-11
>seq6
Length=4319897
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || | |||||||| | || ||| | ||| | || ||| |
Sbjct 3144697 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACCCTGGAAGTCGAGTCATCC 3144756
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| ||||| || | || || ||||| ||||| || || || ||||||||||||
Sbjct 3144757 GATACCATTGATAACGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 3144816
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||||||| | || ||||| ||||| || |||| ||| | |||||| |||
Sbjct 3144817 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 3144876
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || || ||||||||| |||| |||| ||
Sbjct 3144877 ATCCAGAAGGAATCTACTCTCCACTTGGTTCT 3144908
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 26781 GTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAG 26840
|| ||||| | ||||| || | ||||| | || | || || ||| ||||||||
Sbjct 3144481 GTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGAC 3144540
Query 26841 CAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATT 26900
| ||||| ||||||| |||||||| || || ||||| || || || | || ||
Sbjct 3144541 AATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATCCCTCCTGACCAGCAGCGCCTGATC 3144600
Query 26901 TACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAA 26960
| | || || ||||||||||||| ||| | | |||||| |||||||| || |||
Sbjct 3144601 TTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 3144660
Query 26961 TCTACTATCCATCTGGTCCT 26980
||||| | ||||| |||||
Sbjct 3144661 TCTACCCTTCATCTCGTCCT 3144680
>seq2
Length=5316833
Score = 95.1 bits (104), Expect = 1e-14
Identities = 332/510 (65%), Gaps = 19/510 (4%)
Strand=Plus/Plus
Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297
|||||| || |||||| |||||||| || ||||||| || | |||||||| |||
Sbjct 1653430 CTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCATAGCAGTCGGC 1653489
Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCT 148354
| || || ||||||| ||||||||||| | ||| | | || ||||| || |
Sbjct 1653490 AAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGT---CACCGTTCTTTTCAACACG 1653546
Query 148355 CTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC 148414
|||||| || |||||||| |||| | ||| | | ||| || || ||| | | |||||
Sbjct 1653547 CTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTC 1653606
Query 148415 GGCACC---CATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTC 148471
||| | || || ||||| | || || || || | ||||||||||||
Sbjct 1653607 TTTACCGTGGTTCTTACG---GAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTC 1653663
Query 148472 GATGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCA- 148527
|| ||| | || | || || | | | || || || || ||||||| ||| ||||
Sbjct 1653664 GAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCG-AGCAG 1653722
Query 148528 TGCTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAA 148587
|| | || || ||||| | ||| | | || || || ||||| || |||
Sbjct 1653723 TGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAA 1653782
Query 148588 TTTTACTATTGGTGGCGCGAATTTGAGTG-ACATTCAGGCCGATGCCGCCTCCGTGTTTA 148646
| | || || || || | ||| || ||||| || || || || | ||
Sbjct 1653783 TGTAGGAGCCAGTAGCACGGATACG-GTGTACGTTCAGACCAATACCACCAGCCATCTTG 1653841
Query 148647 GATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATG 148706
|| ||||||||||| ||||| || | ||||| || | ||||||||| || | ||
Sbjct 1653842 GAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATA 1653901
Query 148707 TTAAGCAGGTAGCACGATGACATTTGAGGC 148736
| || || | |||| ||||||| ||| |||
Sbjct 1653902 TCAACCAAGAAGCAAGATGACAATTGGGGC 1653931
>seq7
Length=3608416
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824
||| ||||| | || || || || | || || || |||||||| | || | || ||
Sbjct 2834128 CAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 2834069
Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
|||||||||||| | ||||| ||||| ||||| || || || || || ||
Sbjct 2834068 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 2834009
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
|| || ||||||| | | ||||| || ||||| |||| | | | | ||||||||
Sbjct 2834008 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 2833949
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || || |||| ||||||||
Sbjct 2833948 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 2833913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478662286317680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |