Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 seq2 95.1 1e-14 seq7 84.2 2e-11 >seq6 Length=4319897 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | || ||| | ||| | || ||| | Sbjct 3144697 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACCCTGGAAGTCGAGTCATCC 3144756 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || || ||||| ||||| || || || |||||||||||| Sbjct 3144757 GATACCATTGATAACGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 3144816 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||| | || ||||| ||||| || |||| ||| | |||||| ||| Sbjct 3144817 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 3144876 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||||||| |||| |||| || Sbjct 3144877 ATCCAGAAGGAATCTACTCTCCACTTGGTTCT 3144908 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 26781 GTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAG 26840 || ||||| | ||||| || | ||||| | || | || || ||| |||||||| Sbjct 3144481 GTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGAC 3144540 Query 26841 CAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATT 26900 | ||||| ||||||| |||||||| || || ||||| || || || | || || Sbjct 3144541 AATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATCCCTCCTGACCAGCAGCGCCTGATC 3144600 Query 26901 TACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAA 26960 | | || || ||||||||||||| ||| | | |||||| |||||||| || ||| Sbjct 3144601 TTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 3144660 Query 26961 TCTACTATCCATCTGGTCCT 26980 ||||| | ||||| ||||| Sbjct 3144661 TCTACCCTTCATCTCGTCCT 3144680 >seq2 Length=5316833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 332/510 (65%), Gaps = 19/510 (4%) Strand=Plus/Plus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 |||||| || |||||| |||||||| || ||||||| || | |||||||| ||| Sbjct 1653430 CTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCATAGCAGTCGGC 1653489 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCT 148354 | || || ||||||| ||||||||||| | ||| | | || ||||| || | Sbjct 1653490 AAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGT---CACCGTTCTTTTCAACACG 1653546 Query 148355 CTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC 148414 |||||| || |||||||| |||| | ||| | | ||| || || ||| | | ||||| Sbjct 1653547 CTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTC 1653606 Query 148415 GGCACC---CATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTC 148471 ||| | || || ||||| | || || || || | |||||||||||| Sbjct 1653607 TTTACCGTGGTTCTTACG---GAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTC 1653663 Query 148472 GATGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCA- 148527 || ||| | || | || || | | | || || || || ||||||| ||| |||| Sbjct 1653664 GAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCG-AGCAG 1653722 Query 148528 TGCTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAA 148587 || | || || ||||| | ||| | | || || || ||||| || ||| Sbjct 1653723 TGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAA 1653782 Query 148588 TTTTACTATTGGTGGCGCGAATTTGAGTG-ACATTCAGGCCGATGCCGCCTCCGTGTTTA 148646 | | || || || || | ||| || ||||| || || || || | || Sbjct 1653783 TGTAGGAGCCAGTAGCACGGATACG-GTGTACGTTCAGACCAATACCACCAGCCATCTTG 1653841 Query 148647 GATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATG 148706 || ||||||||||| ||||| || | ||||| || | ||||||||| || | || Sbjct 1653842 GAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATA 1653901 Query 148707 TTAAGCAGGTAGCACGATGACATTTGAGGC 148736 | || || | |||| ||||||| ||| ||| Sbjct 1653902 TCAACCAAGAAGCAAGATGACAATTGGGGC 1653931 >seq7 Length=3608416 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || || || | || || || |||||||| | || | || || Sbjct 2834128 CAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 2834069 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||||||||| | ||||| ||||| ||||| || || || || || || Sbjct 2834068 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 2834009 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || ||||||| | | ||||| || ||||| |||| | | | | |||||||| Sbjct 2834008 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 2833949 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || |||| |||||||| Sbjct 2833948 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 2833913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662286317680