Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 376 6e-99 >seq2 Length=5316833 Score = 376 bits (416), Expect = 6e-99 Identities = 1125/1702 (66%), Gaps = 52/1702 (3%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTGTTGAACGCCCGCA 363458 ||||| ||||| ||| ||||| ||| || | ||| | ||||| || ||||| || Sbjct 1654122 AAGACTTTGGAGCGATCATACCTC-CTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCA 1654064 Query 363459 GCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATT-- 363516 ||| ||| | |||||||| || |||||||| | ||| |||| |||| | Sbjct 1654063 GCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATTGA----GCGAGTCT 1654008 Query 363517 --GAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCCACGCCAACAATGT 363571 || ||||| || ||| | || || | | |||||||| ||| | || || | | Sbjct 1654007 TGGAGACATACAACCTTAT--GTCCAGCAAAT-TCTTCACGCATGCCTCTCCCACGCTCT 1653951 Query 363572 ACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACG 363631 ||| || || || | | | || || |||| |||||||| | | | |||||||||| Sbjct 1653950 TCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACG 1653891 Query 363632 ATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAG 363691 | || ||||| |||| || || || |||| ||||| | || ||||||| || | Sbjct 1653890 ACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTG 1653831 Query 363692 GCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC 363749 | || |||||| | | || | ||| | | ||||| || | | |||||| ||| || Sbjct 1653830 GTGGTATTGGTCTGAACG-TACACCGTATCCGTGCTACTGG-CTCCTACATTGCCGGTAC 1653773 Query 363750 AGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808 || ||| ||||| || | ||||| ||||||||||| || |||| ||||| | | Sbjct 1653772 CAACGG-TACGTCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCT 1653714 Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868 | |||||||||||||| ||||| || || ||||| || || ||||||||| | Sbjct 1653713 ATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGC 1653654 Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTG 363928 | | ||| | || ||||| ||||| ||||| || ||| || |||||||| | | | Sbjct 1653653 ACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCAGGG 1653594 Query 363929 CACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAG 363988 | ||||| || ||| || |||||| | |||| | ||| |||||||| || || | Sbjct 1653593 CCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAA--AA 1653536 Query 363989 GTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TG-TATGG 364044 | | | | ||| | || | ||||| |||| || || || ||| |||| || ||||| Sbjct 1653535 GAACGGTGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTATGG 1653476 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 | | || | | ||||| ||||||||||| || |||||| |||| ||| ||||| Sbjct 1653475 AGAG--GAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACT 1653418 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || || |||||||| |||| ||||| | || | |||| |||||| |||| || Sbjct 1653417 ATCAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCA 1653358 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 | ||| | ||||| ||| | |||||||||||| |||||| || |||| ||||| | | Sbjct 1653357 TTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCA-T 1653299 Query 364225 CAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 | | || |||||| || || || |||||||| ||| || || |||||| || || Sbjct 1653298 CCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGT 1653239 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACT---TTTGA 364337 || |||||||| || | || || || | || | | | |||| || | || Sbjct 1653238 CTGCAACCTTGCTTCTCTGGCTCTGCCCTCCTTCATCAACTACGATGAGGCTTGCTACGA 1653179 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397 | | || | | | | || | | || | | |||| || ||||| | ||||| Sbjct 1653178 CTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTGTTCGCAACCTGAACAAGATCATCGA 1653119 Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTCATCGCCCGATTG 364456 ||| | || || ||| | || | || ||| ||||| || || || |||| Sbjct 1653118 TGTGAACCACTA-CCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGGCCCATTG 1653060 Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC--AAGATGGCATTTGATTC 364514 |||||||||| |||||||| || || | ||| | ||||| ||| | || || || Sbjct 1653059 GTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCT--TGCTCTGCGCATGCCCTTCGAGTC 1653002 Query 364515 GCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGAC 364574 ||||| ||||||| || || ||| |||||||||| || || ||| || || | || Sbjct 1653001 ACCTGAGGCTCGTGAGCTCAACAAGCAGATCTTTGAGACCATTTATCACGCTGCCCTCAC 1652942 Query 364575 TG-CTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTC 364633 || || |||| | |||| || |||| ||||| || | |||| ||||| Sbjct 1652941 TGCCTCCGTG-CAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGTTCCCCCG 1652883 Query 364634 TTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACT 364693 || |||| | ||||||| || | ||||| |||| ||| |||| || ||| ||| Sbjct 1652882 CCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGACT 1652823 Query 364694 GGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC--TC-CCTCGTTACAG 364750 |||| || || || | || |||| || || | || ||| || ||| || | Sbjct 1652822 GGGAGACTCTTCGAGAGGAAGTCAAGACACACGGCATCCGTAACAGTCTGCTCCTT---G 1652766 Query 364751 CGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGT 364810 | || ||||| || || ||| | ||||| || || ||||||||||||||||| || | Sbjct 1652765 CTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCT 1652706 Query 364811 TTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGT 364870 || ||| | || ||| || ||||| | || || || | ||| || || | Sbjct 1652705 ACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCT 1652646 Query 364871 ACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCA 364930 || ||||||| ||| |||| || |||||| || ||||||||| |||| Sbjct 1652645 GGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCA 1652586 Query 364931 TCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTT 364990 | || | |||||||| | ||||||||||| | || | ||| | ||| || | | Sbjct 1652585 TTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGT 1652526 Query 364991 ACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTG 365050 | || || || |||||||| || ||| || || | ||||| || ||||| |||| Sbjct 1652525 ATAAGACTGTTTGGGAAATCTCTCAGCGCCAGGTCGTTCAGATGGCTGCTGATCGAGGTG 1652466 Query 365051 CTTTTATCTGTCAGAGCCAGTC 365072 | || || |||| |||||| Sbjct 1652465 CCTTCATTGATCAGTCCCAGTC 1652444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353282714858