Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 >seq2 Length=5316833 Score = 181 bits (200), Expect = 1e-40 Identities = 577/884 (65%), Gaps = 18/884 (2%) Strand=Plus/Plus Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886 |||||| || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 1653298 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1653357 Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 62945 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 1653358 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GCTTCTGAGCCTTGA 1653416 Query 62946 TTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCGAACTCGT 63002 | || ||| | ||| | ||| ||||| | |||| |||||||| | Sbjct 1653417 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 1653473 Query 63003 CTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63062 |||| | | | | || ||||| || || | || ||||||| || ||| || |||| Sbjct 1653474 CTCCATAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGT 1653533 Query 63063 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 63122 | | || || ||||| || |||||||| |||||||| || | || || || | || Sbjct 1653534 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 1653593 Query 63123 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182 || ||||| || || ||||| ||||| |||||| | | | |||||| | Sbjct 1653594 CCCTGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 1653653 Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242 |||| || || | ||| ||||| | | | || || || ||||| || ||||| || | | Sbjct 1653654 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 1653713 Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302 | | ||| ||||| || | || | | ||| |||| || ||| || || ||||| |||| Sbjct 1653714 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGACGTACCGTTGG 1653773 Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAATAT----TACTAATTGATAGACCTATTCCC 63358 | || | || ||| ||| | ||||| ||| ||| || | |||| || || Sbjct 1653774 TACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGTACG--TTCA--GACCAATACCA 1653829 Query 63359 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 63418 || ||||| || ||||| | || || || | ||||| ||||| ||||| ||||| Sbjct 1653830 CCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTG 1653889 Query 63419 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 63478 || ||| |||| | || | || || |||| |||| | || || || || || Sbjct 1653890 TCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTG 1653949 Query 63479 AATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63538 || | || ||||| || || || || |||| || | || ||||| ||||| | Sbjct 1653950 AAGAGCGTGGGAGAGGCATGCGTGAAGAATTTGCTGGACATAAGGTTGTATGTCTCCAAG 1654009 Query 63539 GCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63597 || || ||||| || || | || || | |||||||| | |||||||||||| Sbjct 1654010 ACTCGCTCAATATCATCACCCCAGA-TACCAACAGACACACGCATGATCATGTGCTGAGG 1654068 Query 63598 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63657 | || || ||||| || || || | | ||| ||| |||||||| || || || Sbjct 1654069 GCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCC 1654128 Query 63658 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 ||| || | |||| || || || || || | ||| | |||| Sbjct 1654129 AAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1654172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631849512400