Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 125 1e-23 seq4 118 2e-21 seq9 107 4e-18 seq2 98.7 2e-15 seq6 93.3 9e-14 >seq7 Length=3608416 Score = 125 bits (138), Expect = 1e-23 Identities = 383/586 (65%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || | || ||||| ||||||||||||||||||||| ||| Sbjct 1893403 TCGAAGAAGTTGGTCTTACCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1893462 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 1893463 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 1893522 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| ||||| || | Sbjct 1893523 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCGGTGAGG 1893582 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 1893583 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATCTGCTTGCTGGCA 1893642 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 1893643 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 1893695 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| |||| Sbjct 1893696 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 1893755 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | |||| ||| ||| | | |||||| ||| | | ||||| Sbjct 1893756 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAAGGCAAC 1893815 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 1893816 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 1893875 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | ||| || || || || || | ||||| || | |||| ||| || Sbjct 1893876 CTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTC 1893935 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| || || ||||| |||| || |||||| Sbjct 1893936 CTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 1893981 >seq4 Length=4792382 Score = 118 bits (130), Expect = 2e-21 Identities = 207/299 (69%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 218516 CTGACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCT 218571 ||||||| ||| ||| ||||| ||||| ||| | || | || || || || || Sbjct 2952439 CTGACTTTATCAACAGAGAGCTTATTCTCTTCAGTATGGCTG-ATAATATG---CGATCC 2952494 Query 218572 ATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTC 218631 ||||| |||| |||||||| ||||||| ||||||||| || | | |||| ||| Sbjct 2952495 ATTCCGTCCGTGCTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTC 2952554 Query 218632 AAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATT 218691 ||| | |||||||| |||| | ||||||| | | || |||||||||| || || Sbjct 2952555 AAGAGAAACCTGGTCAAAGATAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCTGAGCAG 2952614 Query 218692 TCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751 ||| ||||||||||||||| ||| ||| || | || | ||| |||| ||| || Sbjct 2952615 ACTGCCTACCATCACGGTGAACAGTCTCTCCAACAGACTATCATTGGCCTGGCCCAGAAC 2952674 Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 | || || |||||||| |||| ||| |||| || | || |||||||| || Sbjct 2952675 TTCGTCGGTTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 2952733 >seq9 Length=3114872 Score = 107 bits (118), Expect = 4e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 1171125 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 1171184 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 1171185 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 1171244 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 1171245 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 1171303 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 1171304 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 1171349 >seq2 Length=5316833 Score = 98.7 bits (108), Expect = 2e-15 Identities = 448/698 (64%), Gaps = 13/698 (2%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | |||||| | |||||||| ||||||||||| | | || || || | | || Sbjct 1652446 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 1652504 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 |||| ||||| ||||| |||| ||||||||||| | | | ||| || |||| Sbjct 1652505 AGATTTCCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCT 1652564 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292 | || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 1652565 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGT 1652624 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | || || || || | | ||||||||| ||||||||||||||||| || Sbjct 1652625 -CGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 1652683 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412 || ||| ||||| || ||| ||| ||| ||| || |||||| | Sbjct 1652684 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 1652743 Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469 ||| || ||||||||| ||||| |||| ||| | | || | ||||||| Sbjct 1652744 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 1652803 Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527 | | ||| | |||||| |||||| ||| || || | || ||| | | Sbjct 1652804 TCCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCGA 1652861 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||| | |||||||| ||| || || |||| ||||||| | ||| || | ||| | Sbjct 1652862 ACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCT 1652921 Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 || |||| ||| || || | ||||| |||||| ||| ||||||| | Sbjct 1652922 TAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCAAAGATCTGCTTG 1652980 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 ||||||| ||||||| || || || ||||| ||| | ||| |||| Sbjct 1652981 TTGAGCTCACGAGCCTCAGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCA 1653040 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766 || ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| | Sbjct 1653041 AGGCCCTGAACACCAAGACCAATGGGCCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG 1653100 Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 || | || ||||||| ||| || ||| |||||| Sbjct 1653101 ACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 1653138 >seq6 Length=4319897 Score = 93.3 bits (102), Expect = 9e-14 Identities = 430/674 (64%), Gaps = 19/674 (3%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 2037536 AGTTGGTTCCCTTTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 2037477 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 |||||| || || || || || || || || || ||||| | || ||||| | || Sbjct 2037476 GCGTGCTGACGTTCTCCTTCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 2037417 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | || | | |||||||| |||||| Sbjct 2037416 TTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 2037359 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932 ||||| || ||||| || || ||| || || || |||| || |||| Sbjct 2037358 GACTCCGGATTCCTGGACAATGTCACAACTGATATTTACCATTACGAGCCTAACAAGAAG 2037299 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 || | ||| || |||||| | |||||| | ||||||||||| | Sbjct 2037298 CTGGCTTGTTACAAGGGTAACCTGGCCAATTTCGTTAAGATTCGCCCTGAGGCCAAGAGC 2037239 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| || | | | |||| | | | | |||||| || || | ||| Sbjct 2037238 TACTACACTCTCTCCGCCTCTACCGTCCAATTCAAGTTCCCTCCTCCTGGTATCCTGACT 2037179 Query 280053 GGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110 || ||| || || ||| || || || | | ||| |||||| | ||||||| Sbjct 2037178 GGTGTCAAGTCTCAGACTCGTGCTATTATCCGCATGTCC--AACGTCTCATACGCTTATC 2037121 Query 280111 CCAATGGCCCCAACATCTTCA--GCAG--TGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 || | || | | ||||| |||| |||| | || | | || || || Sbjct 2037120 CCGGT-GCGACGAAGCCTTCACTGCAGGATGTCTCTTGTCAATTGAGTCTGTCTTCTCGT 2037062 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 ||| | ||||||| ||||| ||||| || ||||| || || ||||| |||| || ||| Sbjct 2037061 GTTGCTATCATTGGCCCCAACGGTGCTGGCAAGTCGACTCTTATCAAGCTCCTTACCGGC 2037002 Query 280227 GAGAC---CCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 ||||| || |||| || ||| ||| || |||||| | || || | |||| Sbjct 2037001 GAGACTATCCCTACCAC---CGGAAAGGTTGAGAAACACCCCAACCTCCGTATTGGTTAC 2036945 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 || ||||||||| | | ||| | |||| || |||| | ||| |||||||| ||| Sbjct 2036944 ATCAAGCAGCACGCTCTAGAGCACGTTGAGATGCATTTGGAGAAGACCCCTAACCAGTAC 2036885 Query 280344 ATTCAGTGGCGCTA 280357 |||||||||| || Sbjct 2036884 CTTCAGTGGCGTTA 2036871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836549785979