Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq7 95.1 1e-14 seq2 95.1 1e-14 >seq6 Length=4319897 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 ||||| || |||| | ||| | || | || || || || || |||||||| |||||| Sbjct 3145151 CCGCCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 3145092 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| |||||| | || ||||||||| |||| |||||||| || || || ||| Sbjct 3145091 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 3145032 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| |||||| || | | |||| ||||| |||| ||||| Sbjct 3145031 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATAGTGTCACTGGACTCGACC 3144972 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || ||||| ||||| || |||||||||||||| Sbjct 3144971 TCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 3144925 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | |||||||| || ||||||||||| ||| Sbjct 3144698 ATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCG 3144639 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| ||||| || ||||| |||| || ||||| ||||| ||| Sbjct 3144638 GCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGA 3144579 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| |||||||| ||||||| || | | || | ||| |||| || ||| Sbjct 3144578 GGGATGCCCTCTTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTATCGGACGACTCG 3144519 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | || | || ||||| || || ||||| || Sbjct 3144518 ACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGAC 3144481 >seq7 Length=3608416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| || || ||| || || || || ||| Sbjct 2833928 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCA 2833987 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || || ||||| || ||||| ||||| || Sbjct 2833988 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 2834047 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| || || || || | ||| | ||| || || || || || Sbjct 2834048 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 2834107 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 2834108 TTGACGAAAATCTGCAT 2834124 >seq2 Length=5316833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || || |||||||| ||| | ||| || ||| || || || ||||||||| |||| Sbjct 3771248 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 3771307 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 || |||||||||||||| |||||||| || ||||| ||||| || | | || Sbjct 3771308 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 3771367 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | |||||| | ||| ||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 3771368 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 3771427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134302712628