Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq7 116 8e-21 seq9 98.7 2e-15 >seq7 Length=3608416 Score = 116 bits (128), Expect = 8e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | || |||| ||| | ||| ||| |||| || Sbjct 1893617 ATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACCGAGGCTCTTCCCTGTGCC 1893558 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | |||||||||||||| |||||| |||||||| || ||||| || || || | Sbjct 1893557 CTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTC 1893498 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| ||||| | ||||| || ||||| ||| |||||||| | ||| |||||| Sbjct 1893497 CTTGTCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAG 1893438 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| || ||| || || || ||||||||||| |||||||| Sbjct 1893437 AACATCTCCCTTGGTGGTAAGACCAACTTCTTCGAGAAGCGTGT 1893394 >seq9 Length=3114872 Score = 98.7 bits (108), Expect = 2e-15 Identities = 174/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| | | ||| | || ||| | ||| || ||||| || ||| | |||| | Sbjct 1171374 AGTCAATGGTGGTCATCTCAGTATCAGCGGAGTCAAGGTCGTGCTCGACGAAGACAGTCT 1171315 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | | || || |||| |||||| ||| ||| |||| || |||||||| ||| Sbjct 1171314 TGACCTCGCTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGA 1171256 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || |||||||| || | |||||||| ||| | Sbjct 1171255 GTGGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTGAGACGG 1171196 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 1171195 AGGTGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 1171136 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 1171135 AGATCCTCACC 1171125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879731517650