Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 192 7e-44 seq7 178 2e-39 seq4 82.4 9e-11 >seq2 Length=5316833 Score = 192 bits (212), Expect = 7e-44 Identities = 1163/1842 (63%), Gaps = 43/1842 (2%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1652313 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 1652372 Query 113625 CCTGCTTCCAGGCATACATA-TGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 113683 || |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 1652373 CCAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 1652431 Query 113684 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATC 113743 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1652432 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1652491 Query 113744 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 113803 || | | ||||||||| ||||| | || || ||| | ||| | ||||| Sbjct 1652492 ACCTGGCGCTGAGAGATTTCCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATG 1652551 Query 113804 TCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 113863 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 1652552 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 1652611 Query 113864 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 113923 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 1652612 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 1652671 Query 113924 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 113983 ||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| ||| Sbjct 1652672 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 1652731 Query 113984 AAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 114043 | || |||| ||| ||| || ||||| || || | ||| || |||||||||| || Sbjct 1652732 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 1652791 Query 114044 TTTTCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 114101 | | | | | | | | || || | | |||||||| || | | || | | Sbjct 1652792 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 1652849 Query 114102 GCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 |||||| || |||||||||||||| | ||||| || || |||| || || ||| | Sbjct 1652850 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGG 1652909 Query 114162 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 | ||||| ||| |||| | ||||| || |||||| |||||||| || |||| Sbjct 1652910 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCT 1652966 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 114277 |||| || | || | | ||||| || || || | | || || | | Sbjct 1652967 CAAAGATCTGCTTGTTGAGCTCACGAGCCTCAGGTGACTCGAAGGGCATGCG-CAGAGCA 1653025 Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 | || |||| || || || || ||||| || ||||| || || || | ||| ||| Sbjct 1653026 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGCCGGTGGCGCATGTTACTG 1653085 Query 114338 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 || ||||| || || || || ||| |||||| | | | || || || Sbjct 1653086 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACA 1653145 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 114454 ||||||| ||| | || | ||| | | | || | || || ||| || | || Sbjct 1653146 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 1653202 Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514 | | || || || | || || || || || |||| | ||| || || | Sbjct 1653203 ATGAAGGAGGGCAGAGCCAGAGAAGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 1653262 Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574 ||||| |||||||| || |||| || || || ||||| || | ||||||||| || Sbjct 1653263 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 1653322 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| | Sbjct 1653323 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 1653382 Query 114635 TTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTCC 114691 | ||||| || | ||| | | || | | || | | || | ||| || | |||||| Sbjct 1653383 TCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTTG-CCCTCC 1653439 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 | |||||||||| ||| || || || ||||| || || | || | || || || Sbjct 1653440 TTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCATAGCAGTCGGCAAGGCCAGGG 1653499 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 || | ||||| | || | ||| | ||| || ||||||||||||||||| || Sbjct 1653500 CACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGA 1653559 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 114871 || |||||||| || || ||| || || || | | || || | || || || Sbjct 1653560 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTACCGTGGTTC 1653619 Query 114872 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 114931 ||| | || | || || | || ||| | |||||| || || ||||| | || | Sbjct 1653620 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 1653679 Query 114932 G-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACG 114985 | || | ||| | | ||| |||||| ||||| | || ||| || || || Sbjct 1653680 GCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACA 1653736 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTAT 115043 |||||||| |||| | ||| | || || || || || || || ||| | | Sbjct 1653737 CGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAATGTAGGAGCC--AG 1653794 Query 115044 TGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 115103 | || | || | || | || || ||||||||| || ||| ||| ||||| || | Sbjct 1653795 TAGCACGGATACGGTGTACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCAC 1653854 Query 115104 ACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC 115163 | | ||||| | ||||||| || || || ||| |||| | | | | ||||| Sbjct 1653855 AGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGC 1653914 Query 115164 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 115223 | |||| ||| ||| || || || ||||||||||| || || | || || ||| Sbjct 1653915 AAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGCGTGA 1653974 Query 115224 ACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 115281 | | | || |||||| | ||| ||||||||||| ||| || || || Sbjct 1653975 AGAATTTGCT--GGACATAAGGTTGTATGTCTCCAAGACTCGCTCAATATCATCACCCCA 1654032 Query 115282 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 115341 ||||| | || || ||||| | ||||| || || || | | |||| || | Sbjct 1654033 GATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAAT 1654092 Query 115342 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | ||||||| |||||| ||||||| ||||| || Sbjct 1654093 CTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1654134 >seq7 Length=3608416 Score = 178 bits (196), Expect = 2e-39 Identities = 537/818 (66%), Gaps = 25/818 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 1893384 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTACCACCAAGGGAGATGTTCTCCAT 1893443 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 125872 || || || ||||| | | || | | | |||| |||| ||| Sbjct 1893444 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGG 1893498 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| ||| Sbjct 1893499 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 1893558 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 ||| || || || || || |||| ||| |||||| ||||| || | ||| Sbjct 1893559 GCACAGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 1893618 Query 125993 GCGTGAATGGTGTCCACCC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 | || || | | | | || | | ||| | || | || ||| || |||| Sbjct 1893619 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 1893675 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| |||||||| ||||| |||||||| || || |||||| ||| || ||| Sbjct 1893676 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 1893735 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 1893736 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 1893795 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCA 126228 || ||| ||||| |||| |||||||| ||||||||| | | | || | | | ||| Sbjct 1893796 TCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 1893854 Query 126229 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 || ||||| | ||||| || ||| || || | ||||| || || | ||||| Sbjct 1893855 TCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAG 1893914 Query 126289 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 126348 | | | | || || |||||||| | || ||||| || || || ||| Sbjct 1893915 GTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGA 1893974 Query 126349 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 126407 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| | Sbjct 1893975 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGA 1894033 Query 126408 CCTCATCGGCAAAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 126466 |||| | | ||| ||| || ||||| ||||| ||||| || |||| || Sbjct 1894034 CCTC-GCCACTGAATCGTTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAG 1894092 Query 126467 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCG 126523 || || ||||| | | || ||| |||| | ||| || | ||||||||| Sbjct 1894093 AAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCG 1894152 Query 126524 TCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | |||||||| |||||||| | |||||| |||||||| Sbjct 1894153 TGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 1894190 >seq4 Length=4792382 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/212 (70%), Gaps = 12/212 (6%) Strand=Plus/Minus Query 171941 CCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 172000 |||| ||||| || ||||| ||||||||||| | | ||| | ||||| | || Sbjct 2952715 CCACTGGGTTCCAGACAGTTGATGTTGTTTGAACCGACGAAGTTCTGGGCCAG---GCCA 2952659 Query 172001 ATCGTA-TCCGCGAGGGAGACT--TCACCGTGATGGTAGGCCGACTTGTCCGCGACATAC 172057 || || || | | |||||| ||||||||||||||||| | || || | |||||| Sbjct 2952658 ATGATAGTCTGTTGGAGAGACTGTTCACCGTGATGGTAGGCAGTCTGCTCAGAGACATAA 2952599 Query 172058 GCCGCCAACTGTGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCACGCATAC 172114 | ||||| | | |||| ||| ||| ||| ||||| | | |||||| ||||| Sbjct 2952598 CCAGCCAATTCAACGACCT---TCTTATCTTTGACCAGGTTTCTCTTGAAGCAGGCATAT 2952542 Query 172115 ATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 |||||||| | ||| |||||||| ||| || Sbjct 2952541 ATGACCTTACGCTGACCAGGCTTGAAGCCATC 2952510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353458128520