Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 248 1e-60 seq7 86.0 7e-12 >seq2 Length=5316833 Score = 248 bits (274), Expect = 1e-60 Identities = 1029/1600 (64%), Gaps = 59/1600 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| ||||| ||| |||||||| ||||| | | || Sbjct 1652437 GTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGA---- 1652492 Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 | | ||| | ||||||| |||||||| |||| | ||||| ||| | || |||| Sbjct 1652493 CCTGGCGCTGAGAGATTTCCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATGT 1652552 Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672 ||||| ||||| || ||| |||| | | || | | |||||| | | | Sbjct 1652553 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 1652609 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729 |||| ||||| | | | || | ||| || || | ||||| || || | Sbjct 1652610 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 1652666 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 ||||||| || ||||| |||||||||| | |||||||| ||||| ||||| |||| Sbjct 1652667 CACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 1652726 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||| || || || | || || || ||||| ||||| | ||| |||||||| |||| Sbjct 1652727 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 1652786 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909 || | ||||| || ||| || | | ||||| || | | || | Sbjct 1652787 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------G 1652840 Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969 || | | |||||| || || || | |||||||| || || ||||||||||| Sbjct 1652841 GCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGG 1652900 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028 | ||| | ||||| ||| |||| || | | | || | | || || || ||||| Sbjct 1652901 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAA 1652959 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085 || |||||||| || || || |||| |||| ||| | |||||||| | Sbjct 1652960 ATGGTCTCAAAGATCTGC---TTGTTGAGCTCACGAGCCTCAGGTGACTCGAAGGGCATG 1653016 Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | || || || || |||| || || ||||||||||| ||||||||||| || || Sbjct 1653017 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGCCGGTGGCG 1653075 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 ||||||| | ||||| | || ||||| ||| ||||||| | || || Sbjct 1653076 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 1653135 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 || ||| || ||| | || | || | | | ||| | | | || Sbjct 1653136 GTTGCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA-GCAAGCCTCAT 1653194 Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323 | || |||| | ||| ||||| | ||| ||||| ||||| |||| |||||| Sbjct 1653195 CGTAGTTGATGAAGGAGGGCAGAGCCAGAGAAGCAAGGTTGCAGACAGCGACCTCGTCAG 1653254 Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383 | | ||| || | |||||| || |||| |||||| || ||| ||| | ||||| Sbjct 1653255 GGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 1653314 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 | || || ||| |||||| |||||||| ||||||||| ||||| | || || || | Sbjct 1653315 TTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 1653374 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGA 110500 |||| | || |||||||| | ||| | | || | | | | | ||| |||| | | Sbjct 1653375 TCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG-ATAGTCTTGCG--ACCCT 1653431 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 || |||| ||||||||| ||||| |||| || |||| ||| || || | || Sbjct 1653432 TGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCATAGCAGTCGGCAA 1653491 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || || || ||| || | || | ||| | || || ||||| | ||||| Sbjct 1653492 GGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCA 1653551 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||| || ||||| ||||| | || ||||||||||||| | |||| || | || Sbjct 1653552 TGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTAC 1653611 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG- 110739 | ||||| || || || | || || | || ||| |||||||| || ||||| ||| Sbjct 1653612 CGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGA 1653671 Query 110740 -----ACAGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 | ||| || || ||| | | || |||||| |||||||| || ||| | Sbjct 1653672 TGGCAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGT 1653728 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 ||||||| | |||||||||| || || | || ||| || ||||| ||| || Sbjct 1653729 TGAAGACACGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAATGTAGG 1653788 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | | | ||||| || ||| | | || |||||||||||| ||| ||| || Sbjct 1653789 AGCCAGTAGCACGGATACGGTGTACGTTCAGACCAATACCACCAGCCATCTTGGAGATCA 1653848 Query 110915 GTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 ||||| ||| |||| ||| | || || || ||||| || |||| | ||| Sbjct 1653849 TGGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACC 1653907 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 | |||||||| |||| || || |||| || || || |||||||| || || | ||| Sbjct 1653908 AAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCA 1653967 Query 111034 TGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 || ||| ||| ||| |||||| ||||||||| || Sbjct 1653968 TGCGTGA--AGAATTTGCTGGACATAAGGTTGTATGTCTC 1654005 >seq7 Length=3608416 Score = 86.0 bits (94), Expect = 7e-12 Identities = 364/559 (65%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||||||||| || |||| || || Sbjct 1893672 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 1893731 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | || ||| |||||||| Sbjct 1893732 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 1893791 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| ||| ||||| || | ||||||| || ||||| ||| ||| || || Sbjct 1893792 ACCCTCAACAGCAGCGAAGGCAACGAGACGCTGGGC-AAAGGAGGAGTCCTTATCCTGGA 1893850 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTTCG 119729 ||| || ||||||| |||||| | || |||||||| | || | ||||| | | Sbjct 1893851 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGAATGGTCTCAATGGCGTTG 1893909 Query 119730 AA-AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 || | || | ||| | || ||||| || || | |||||||| |||||||| Sbjct 1893910 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 1893968 Query 119789 CTCACCATGAACCAT-TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAA 119847 ||| || | | | ||| || ||| || | || || | ||||| |||| | Sbjct 1893969 CTCGGAGTGGATGTTCTCCATCATG-ATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGA 1894027 Query 119848 TTTGCACTTCGTCAGCAAAATTGTT-GTTGATATTTTCAAAAACAATTCCATCGGATCCA 119906 | || || ||| || | ||| ||| | || || || ||||| ||||| || || Sbjct 1894028 TCTGGACCTCGCCA-CTGAATCGTTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCA 1894086 Query 119907 GCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTC 119963 |||||||| || | ||||| | || ||| |||| | | || ||| ||| Sbjct 1894087 GCGAAGAAAGCAAGGATGTGAGAGACAAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTC 1894146 Query 119964 CAGTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCC 120023 ||||||| | ||| || || | || | ||| ||||| |||||| || || ||| Sbjct 1894147 CAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCC 1894206 Query 120024 TTTTTATAGAGTTCCCAAA 120042 || || || | || ||||| Sbjct 1894207 TTCTTGTACATTTGCCAAA 1894225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975860118200