Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 226 3e-54 seq7 125 8e-24 seq1 87.8 2e-12 >seq2 Length=5316833 Score = 226 bits (250), Expect = 3e-54 Identities = 1138/1781 (64%), Gaps = 53/1781 (3%) Strand=Plus/Plus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| || || |||| | || || |||||||| |||||| Sbjct 1652306 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 1652365 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669 ||||| || | ||||| || | || | |||||| | || |||| |||||| || Sbjct 1652366 TTGAGGCCCAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1652424 Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727 | |||| | |||| ||| |||| | ||||||||| ||| || | || ||| Sbjct 1652425 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1652482 Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 || | || ||| | | ||||||||| || || || ||| ||||| ||| Sbjct 1652483 ATCTGAACGACCTGGCGCTGAGAGATTTCCCAAACAGTCTTATACAGAGCCTTGACATCG 1652542 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844 | ||||| | | || || ||||| ||||| | | || ||| || | | |||| Sbjct 1652543 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 1652599 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 ||| | | |||||| ||||| || | || || |||| || |||||||| | Sbjct 1652600 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 1652659 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 ||||| || ||||| | || | |||||||| | |||||||| || ||||| Sbjct 1652660 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 1652719 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1652720 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1652779 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 106079 ||||| | || | | ||||| ||||| ||| | |||||||| || | | Sbjct 1652780 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 1652836 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | || || || |||| |||| || || || || | || | || | ||| ||||||| Sbjct 1652837 GAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCCT 1652894 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 106198 || || |||| ||| | | | ||||| | ||| | || |||| ||| Sbjct 1652895 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 1652953 Query 106199 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 106258 ||||| ||||| |||||||| | || | ||| || ||| ||| || || | Sbjct 1652954 TGATAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCAGGTGACTCGAAGGGC 1653013 Query 106259 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 ||| || | || || |||| || || || |||||||| | |||||| || | ||| Sbjct 1653014 ATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGCCGGTG 1653072 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 106377 ||||| ||| || || || || || || || || || |||| ||| Sbjct 1653073 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 1653132 Query 106378 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 106436 || || ||||| || ||| | || || || || | | || | || || Sbjct 1653133 CAGGTTGCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAG 1653188 Query 106437 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 ||| || | ||| | || || || | || || | ||||| ||||| || Sbjct 1653189 CCTCATCGTAGTTGATGAAGGAGGGCAGAGCCAGAGAAGCAAGGTTGCAGACAGCGACCT 1653248 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 | || | |||||| | |||||| || |||| |||||| || || || || | Sbjct 1653249 CGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGA 1653308 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || | Sbjct 1653309 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 1653368 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGC-TGGTACAATGGCGTT 106671 |||| ||||| | || ||||| || | ||| | | || | | | || || | || Sbjct 1653369 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGTCTTGC--- 1653425 Query 106672 GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 106729 | ||| | |||||| |||||||||| ||| || || || |||||||| ||| || | Sbjct 1653426 GACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCATAGCAG 1653484 Query 106730 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACC 106789 |||| || || || || || || || | || | ||| | ||| || ||||| Sbjct 1653485 TCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACA 1653544 Query 106790 CGCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTCTACACCGAGCCT 106847 |||||||||||||| || || ||||| ||| || |||| || || | || ||| Sbjct 1653545 CGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGGCCCTGACCT 1653602 Query 106848 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 | || | ||| ||||| || | ||||||||||| | || ||| | |||||| |||| Sbjct 1653603 CCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCT 1653662 Query 106908 CAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTG 106964 | || |||| || | || || ||| ||| | || | |||||||| || | Sbjct 1653663 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAG 1653722 Query 106965 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 107024 || ||| || || |||||||| |||| || ||| | || ||| || || || || Sbjct 1653723 TGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAA 1653782 Query 107025 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 107084 | || | | || | | | || | || || |||||||| |||||| ||| | Sbjct 1653783 TGTAGGAGCCAGTAGCACGGATACGGTGTACGTTCAGACCAATACCACCAGCCATCTTGG 1653842 Query 107085 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 107144 |||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 1653843 AGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATAT 1653902 Query 107145 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 107204 | | | ||||||| |||| || || || || || || |||||||| || || | Sbjct 1653903 CAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAG 1653962 Query 107205 TTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAAT 107262 || || |||| | | || |||||| || ||||||||||||||| ||||| Sbjct 1653963 AGGCATGCGTGAAGAATTTGCT--GGACATAAGGTTGTATGTCTCCAAGACTCGCTCAAT 1654020 Query 107263 GTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || ||| || | | ||||||||| | ||||| Sbjct 1654021 ATCATCACCCCAGATACCAACAGACACACGCATGATCATGT 1654061 >seq7 Length=3608416 Score = 125 bits (138), Expect = 8e-24 Identities = 333/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 1893385 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTACCACCAAGGGAGATGTTCTCCATG 1893444 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 117100 ||||| || || || | || || | | | | || |||| |||| Sbjct 1893445 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 1893499 Query 117101 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT 117160 ||||||| | || |||||||||||| ||| ||||||||||| |||| || Sbjct 1893500 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 1893559 Query 117161 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 117220 ||| || || || || || |||| | | |||||| || || || | | ||| Sbjct 1893560 CACAGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 1893619 Query 117221 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 117277 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 1893620 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 1893676 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| ||||||||||| || || || || || || |||||| || || |||| Sbjct 1893677 AGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 1893736 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 ||||||| |||||||| | ||| | |||| | ||| | || |||||||||||||| Sbjct 1893737 TGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCT 1893796 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCAT 117456 | ||| || || |||| || |||| ||| |||||| ||| | || | | | |||| Sbjct 1893797 CAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 1893855 Query 117457 TTCATTGCCCATTTCGCCTTCTT 117479 || ||||| | |||||||| Sbjct 1893856 CGGATGGCCCAGTCGGCCTTCTT 1893878 >seq1 Length=6424668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 2871984 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 2872043 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || ||| |||| || ||| | ||||| ||| | |||||||| || || Sbjct 2872044 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 2872103 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 2872104 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 2872156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980659879560