Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 347 2e-90 seq7 194 3e-44 >seq2 Length=5316833 Score = 347 bits (384), Expect = 2e-90 Identities = 1149/1763 (65%), Gaps = 94/1763 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| || || || ||||||||||||||||| Sbjct 1652309 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTG 1652368 Query 212613 AGGCCCTTGCCCCAGCCGTGCAT-GTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTG 212671 |||||| |||||| |||| |||||| |||| |||| | || | | Sbjct 1652369 AGGCCCAGCTTCCAGCC-TGCAAAGTGCATACTGGTGA---TCTTGCCC---ATCGTGGG 1652421 Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731 ||| | | |||| | |||||| ||||| ||| || ||||| | | | Sbjct 1652422 GTCCTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCG 1652472 Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 ||||| ||||| | | || | | ||| |||| ||||| || ||||| | | | Sbjct 1652473 ATCAGCAGCCATCTGAACGACCTGGCGCTGAGAGATTTCCCAAACAGTCTTATACAGAGC 1652532 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC-- 212849 |||| || | |||| | ||| |||||||| | || || || ||||| Sbjct 1652533 CTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAGCAA 1652585 Query 212850 TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGG 212903 || | ||| ||| | ||| ||| || ||| || | ||| ||||| ||| Sbjct 1652586 TG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGC 1652644 Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 |||||||| | |||||| ||||| | ||| || | | ||||| | ||| || ||| Sbjct 1652645 CAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTG 1652704 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 |||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 1652705 TAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGA 1652764 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TCTGC 213079 || | || |||||||| | | ||||| | | ||| | ||||| ||| | Sbjct 1652765 GCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTCT-C 1652820 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139 ||||||||| | |||| | ||| |||||||||||||| ||||| | ||| Sbjct 1652821 CCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATGTCGAACTGGAGGAT 1652871 Query 213140 GCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCA 213195 || |||| ||||| |||| | | | ||||||||| || | |||||| |||| Sbjct 1652872 ACC----CTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCA 1652927 Query 213196 GCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGC 213254 ||| ||| ||| || |||||||||| || ||||| ||||| |||| | |||||||| Sbjct 1652928 GCT-GCACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCAAAGATCTGCTTGTTGAGC 1652986 Query 213255 TTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCC 213314 | ||||| || ||| ||||||||| || |||| |||| || || ||| Sbjct 1652987 TCACGAGCCTCAGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCC 1653046 Query 213315 TGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGG 213373 || || || | || ||||| | ||| | || |||| ||| |||| ||||| | || Sbjct 1653047 TGAACACCAAGACCAATGGGCCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGACAGG 1653105 Query 213374 GTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGC 213433 ||| ||| |||||||||||||| |||||||| | || | |||| | | Sbjct 1653106 GTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCTTGTG 1653165 Query 213434 CAGGTACTCGTGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAGGGC 213487 || || | ||||| |||||| | ||| | | || ||||| || Sbjct 1653166 CA---AC---TTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAGGAGGGCAGAGC 1653219 Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGT 213547 | || |||||||| || || ||||| | || | | |||||| || || || || Sbjct 1653220 CAGAGAAGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGT 1653279 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-G 213606 |||||||||| || ||||||||| || ||||||| ||| ||| ||||| | ||| | Sbjct 1653280 GCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG-TTGCTCTTGCGGTTGCAGG 1653338 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCC 213666 |||||||||||||||| | ||| |||||||| ||||| | | || || | || Sbjct 1653339 CATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACC 1653398 Query 213667 AGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGT 213726 | || | | ||||||| | | ||| | | | | |||||||| ||||| Sbjct 1653399 AAAGCTTCTGAGCCTTGA-TAGTCTTGCGACCCTTGCCCTCCT--TCTCGTACTTTTCGT 1653455 Query 213727 AGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACA 213786 | || | | ||| || | || || | | || || || || ||| |||| Sbjct 1653456 ACAGAGCCTCGAACTCCTCTCCATAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGCACA 1653515 Query 213787 TGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 | || ||||||| |||| | | || | || |||||| || || |||| ||| || | Sbjct 1653516 TCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 1653575 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 || ||| ||||| | || ||| ||| || || ||| || || ||||| || | Sbjct 1653576 CGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGA 1653635 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCT 213963 | || |||| || | |||||| ||||| | |||||||||||| || || | || | | Sbjct 1653636 ACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGT 1653695 Query 213964 TGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACC 214019 |||| |||||||| | | | || | || ||||||||| || || | || || Sbjct 1653696 TGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACA 1653751 Query 214020 AGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGC 214077 | ||||| ||| |||||||| || || || || ||||| | || | | | || Sbjct 1653752 ACACCGTTCGACGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGT 1653811 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137 | | ||| || || ||||| || ||||||||||||||| ||| | | | ||| | Sbjct 1653812 ACGTTCAGA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTAT 1653869 Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197 | ||| || | || ||||| || | | | | ||||||||| || | |||| Sbjct 1653870 CGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGG 1653929 Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA 214257 || | | ||| | |||||| |||||||| |||||| | | || ||| | || | Sbjct 1653930 GCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGCGTGAAGAATTTGCTGGACA 1653989 Query 214258 GGAGCCTGTAGGTCTCCAGGACT 214280 || |||| ||||||| |||| Sbjct 1653990 TAAGGTTGTATGTCTCCAAGACT 1654012 >seq7 Length=3608416 Score = 194 bits (214), Expect = 3e-44 Identities = 492/738 (67%), Gaps = 29/738 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 1893381 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTACCACCAAGGGAGATGTTCTC 1893440 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA-GCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | || | | Sbjct 1893441 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCT-TCTCGTTGCCAAGAGCGACAAGGA 1893499 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| ||||| | ||||||| ||||||||| | |||| Sbjct 1893500 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 1893559 Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| || || ||||| ||||| ||||||| ||| || ||||| || | || Sbjct 1893560 -CACAGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 1893618 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| ||| || ||| | | ||| | | ||| | Sbjct 1893619 TCCT------GGATCATCTGC----TTGCTG-GCACGACCCTTGAGGTGAGAGTGGAGGA 1893667 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||||||||| |||| | || || || || ||||||| ||||||||||| | Sbjct 1893668 GGCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCA 1893727 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||||| || | || ||||||||||| || | ||||| | ||| ||||| Sbjct 1893728 GACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGA 1893787 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | || | || || | || ||| || Sbjct 1893788 AGATACCCTCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCT 1893847 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 1893848 GGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 1893907 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 |||||| | | | || | | ||| | ||||| | ||||||| | || Sbjct 1893908 TGAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAG---GGAGT 1893964 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| Sbjct 1893965 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 1894024 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 | ||| || || ||||| || | || ||||| ||||| || ||||| || | Sbjct 1894025 GGATCTGGACCTCGCCACTGAATCGTTCGACGAGGTTCTCGTTGACAATACCATCAGAGG 1894084 Query 48546 CAGCAAAGAAGGCAAGGA 48563 |||| ||||| ||||||| Sbjct 1894085 CAGCGAAGAAAGCAAGGA 1894102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532578760960