Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 221 2e-52 seq7 187 5e-42 >seq2 Length=5316833 Score = 221 bits (244), Expect = 2e-52 Identities = 724/1106 (65%), Gaps = 53/1106 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || ||||||||||| || ||||||||||||||| ||||||||| ||| | ||||| || Sbjct 1652942 GTGAGGGCAGCGTGATAAATGGTCTCAAAGATCTGCTTGTTGAG-CTCACGAGCCTCAGG 1653000 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||| ||||| | | ||||| | ||||| || ||||| || || | | Sbjct 1653001 TGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGGCCCTGAACACCAAGA 1653058 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||||| ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 1653059 CCAATGGGCCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 1653116 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| ||||| || | || | | |||| | || ||||| | Sbjct 1653117 CATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGA 1653176 Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 | | | ||| ||| | ||| || || | || | | || || | Sbjct 1653177 AGTCGTAG--CAA---GCCTCATCGTAGTTGATG---------AAGGAGGGCAGAGCCAG 1653222 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 || ||||| || || || |||||||| | |||| || || || || || Sbjct 1653223 AGAAGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCA 1653282 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 |||||| || |||||| || |||| || || || |||||| ||| || || Sbjct 1653283 CAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 1653342 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| || || || ||||| ||| ||| | ||||| || ||| || Sbjct 1653343 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 1653402 Query 221890 TTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGG 221942 | |||| || | | ||| | |||| | | |||| |||||| ||| Sbjct 1653403 CT-TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTAC---- 1653457 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 ||||| | | |||| || || || ||| | ||||| || ||| | ||| | Sbjct 1653458 ---AGAGCCT--CGAACTCCTCTCCATAGCAGTCGGCAAGGCCAGGGCACTCGTTGGGGC 1653512 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 ||||||| |||||| ||| | || || | || |||||| || || |||||||| | Sbjct 1653513 ACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 1653572 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | || | || || || | || || |||||| |||| ||| || | ||||| | Sbjct 1653573 GGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 1653632 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | |||| |||||| ||||| || |||| ||| | ||| |||||||||| Sbjct 1653633 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 1653692 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||||| || | ||| ||| | |||||||| ||||| | || || Sbjct 1653693 TGTTGCCACCCTGGTCGA-CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACA 1653751 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGT-T 222297 | ||||| || ||||||||| || |||||| | || || | | ||| | Sbjct 1653752 ACACCGTTCGACGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGT 1653811 Query 222298 ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGT 222357 || |||| || |||||||| || || ||||||||||| ||| |||||||||| Sbjct 1653812 ACGTTCAGA----CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGT 1653867 Query 222358 GTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 || ||| ||||| ||| ||| ||||| | | | || || ||||| |||| || Sbjct 1653868 ATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG 1653927 Query 222418 AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 | | | || | |||||| || ||||||||| ||| || || ||| | || || Sbjct 1653928 GGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGCGTGAAGAATTTGCTGGA 1653987 Query 222478 CATCAGATCGTACGTCTCTACGACTC 222503 ||| || | ||| ||||| | ||||| Sbjct 1653988 CATAAGGTTGTATGTCTCCAAGACTC 1654013 Score = 87.8 bits (96), Expect = 3e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | ||||| | ||| || ||| | || Sbjct 1652650 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 1652709 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | || ||||| || ||||| || || | Sbjct 1652710 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 1652769 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295 ||||||||||| || | ||| | | |||| || || || || | |||||| || Sbjct 1652770 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCA 1652829 Query 221296 G 221296 | Sbjct 1652830 G 1652830 >seq7 Length=3608416 Score = 187 bits (206), Expect = 5e-42 Identities = 383/568 (67%), Gaps = 5/568 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| | || |||||| || || ||||||||||| Sbjct 1894226 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 1894167 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || || | || |||||| ||| || Sbjct 1894166 TCCAAGGATCTCCACGACTGGAACAACCGC-CTGACTGCCGATGAGCAGTTCTTTGTCTC 1894108 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||||||||| || |||||||| || ||| | Sbjct 1894107 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAACG 1894048 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | || || ||| | ||||| || |||||||| |||||||| || Sbjct 1894047 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 1893988 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || ||||| | || ||| Sbjct 1893987 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGC 1893928 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || || || || ||||| ||| ||| ||| ||||| | |||||| Sbjct 1893927 CCAGCGAACCTACCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCCGA 1893868 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||||| |||||| | || | | | |||| | |||| || || ||||| Sbjct 1893867 CTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTT 1893808 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 |||||||| ||||| ||||| ||||| ||| | || || | ||||||||||||||| | Sbjct 1893807 CGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAA 1893748 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||||||| ||| ||| ||||||||||||||| | || |||||||| Sbjct 1893747 GCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCT 1893688 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||| || ||||||||||| ||| || Sbjct 1893687 TCACACTGACTTTGCCTGCCTCCTCCAC 1893660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844579399360