Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq6 125 8e-24 >seq6 Length=4319897 Score = 125 bits (138), Expect = 8e-24 Identities = 320/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| | |||||||| || || ||||| ||||| || || ||||||||||| ||||| || Sbjct 1616327 ACAGCGATAGGACCAACACCGGGACCGCCACCGCCGTGGGGAATACAGAAGGTCTTGTGG 1616386 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| |||||| ||||| || | ||||| | || || Sbjct 1616387 AGGTTGAGATGGCAGACATCAGCACCAATGTCACCGGGGCTGCAAAGACCGATTTGGGCG 1616446 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | || || |||| |||| || || || | | ||| | Sbjct 1616447 TTCATGTTGGCACCGTCCATGTAGACGAGACCGCCATGCTCGTGGACAAGATCACAGACT 1616506 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 || |||| | | || || || || ||| || ||||| |||| ||| ||| | Sbjct 1616507 TGCTTGATCTCAGGCTCGAAGACGCCGAAAGTAGAGGGATAGGTAACCATGATAGCAGCA 1616566 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA--- 138479 || ||| | | | ||| || || ||||| | ||| || | ||| ||| Sbjct 1616567 AGCTCATCAGCGTGCTTGACACACTTGGCCTTCAGATCCTCGATATCCAGGTTACCAGTC 1616626 Query 138480 TCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 | | | |||||||||||| ||||| ||||| || |||||| | ||| |||||| || Sbjct 1616627 TTACCGTCACACTTGACAGTAACAACCTTCATACCAGCCATGGCAGCAGAAGCAGGGTTG 1616686 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCCTTG 138598 || || || || || | || || || || || |||| ||||| | || || ||| | Sbjct 1616687 GTACCGTGAGCAGAAACAGGGATAAGGCAGACCTTTCGCTTATCTCCATCACGAGCCTCG 1616746 Query 138599 ATGATATGCTTGGAT--TGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGT 138656 || || || | ||| || | || || ||| |||||||||| | || | ||| ||| Sbjct 1616747 -TGGTAAGCCTTGATACAGCGA--AGACCAGCAAACTCACCCTGAGCACCAGAGTTGGGT 1616803 Query 138657 TG 138658 || Sbjct 1616804 TG 1616805 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139284 GCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCT 139343 || ||||| ||||||| || || || || || || || ||||||||||| ||||| || Sbjct 1617491 GCGTAGAAAGCAGACATGTTGGCAAGAAGAGCCTGAGCAGTGCAGATGTTGCTGGTAGCC 1617550 Query 139344 TTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCT 139403 || || | | ||| |||||||| | ||| || || || | | ||||| ||||| Sbjct 1617551 TTCTCACGACGAATGTGCTGCTCACGAGTCTGGAGGGCCAGGCGAAGAGCAGGCTTGCCG 1617610 Query 139404 TCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTT 139463 | ||| || ||| || | || || || || || | ||| ||||| || | | Sbjct 1617611 AGACGATCCTTGGAAACACCGACGAGTCGACCGGGAATTTTGCGCTTGTACTTCTCAGAT 1617670 Query 139464 GTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAA 139513 || || ||||| |||||||| ||||| ||||| || | ||||| ||| || Sbjct 1617671 GTAGCGAAGAAAGCAGCATGGGGACCACCGTAGCCGAGAGGAACACCGAA 1617720 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || || || ||||| || | | ||| || || || || | || Sbjct 1618084 CATGGCCTCAGCAGCGGCGGTGGCTTCGTCGAGAACAGAGGCATTGGCGATGTCGAGGCC 1618143 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || | || |||||||| || ||| | |||| | || | | | ||||| || Sbjct 1618144 AGTCAAATCGGTGATGAGAGTCTGGAAGTTGAGGAGAGACTGAAGACGGCCCTGGCTGAT 1618203 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||||||| ||||| ||||| |||||||| ||| |||||||||||||| ||||| Sbjct 1618204 CTCAGCTTGGTAGGGGGTGTAGCTGGTGTACCAGGCAGGGTTCTCAAGAACGTTGCGCTG 1618263 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCC 140071 || || | || || ||||||||||| || Sbjct 1618264 AATCACAGCAGGAACAAGAGTTCCATAGTAACC 1618296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998262487880