Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 233 2e-56 seq7 125 9e-24 seq1 87.8 2e-12 >seq2 Length=5316833 Score = 233 bits (258), Expect = 2e-56 Identities = 1141/1781 (64%), Gaps = 51/1781 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || | | || ||| || || || ||||| || Sbjct 1654069 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATTGAGCGAGT 1654010 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 75328 ||||||||||||| || |||||| || | | |||| || || | || || ||| Sbjct 1654009 CTTGGAGACATACAACCTTATGTCC--AGCAAATTCTTCACGCATGCCTCTCCCACGCTC 1653952 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||||| || || || || || || |||| ||||||| | | | | ||||| Sbjct 1653951 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1653892 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 1653891 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1653832 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || |||||||| || || | || | | | || | | || ||| || || Sbjct 1653831 GGTGGTATTGGTCTGAACGTACACCGTATCCGTGCTACTGGCTCCTACATTGCCGGTACC 1653772 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| || | ||| || |||| |||||||| || || ||| ||| || |||||| Sbjct 1653771 AACGGTACGTCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 1653712 Query 75569 GTAAATCAAGCGGGGCGTC--GCAAGG-GGTCCATC-GCGGTCTACTTGGAACCATGGCA 75624 || | || | | ||| | || | ||| | | || ||||| | || || ||||| Sbjct 1653711 GTCGACCAGG-GTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 1653653 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 | ||| || | ||||||||||| | || ||||| ||| | || |||| || Sbjct 1653652 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCAGGGC 1653593 Query 75685 TAGAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | || || |||| || ||| ||||| || || |||||||||||||| ||||| || Sbjct 1653592 CCGTGACCT--TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAG 1653535 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGG 75801 ||| | ||| | || | || || || || || || || ||||| || ||| Sbjct 1653534 AACGGTGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTATGGA 1653475 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGAC 75858 |||||||| || || || ||| |||||| || ||||||| | | ||| ||| Sbjct 1653474 -GAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAA---GAC 1653419 Query 75859 TGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 | | | || | | || | ||||| | || ||||| | | ||||| ||||| |||| | Sbjct 1653418 TAT-CAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 1653360 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 ||| ||||| ||||||||||| || ||| ||||| ||||||||||| | || || | Sbjct 1653359 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCA 1653300 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 || ||||| || || ||||| |||||| | |||||| | || ||| |||| Sbjct 1653299 TCCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTG 1653240 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAGAGACTCGCACTT 76094 | ||||| | || || | || || || | ||| | || ||| || || | Sbjct 1653239 TCTGCAACCTTGCTTCTCTGGCTCTGCCCTCCTTCATCAACTACGATGAGGCTTGC---T 1653183 Query 76095 TTGATTATGAAAAACTT-CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 || | | || || || || | ||| || ||||| || || ||| || Sbjct 1653182 ACGACT-TCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTGTTCGCAACCTGAACAAGATC 1653124 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || || || || || || || || || || ||| ||||| ||| | || Sbjct 1653123 ATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGGCCC 1653064 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATTTGA 76272 |||||| | |||||||| || || || |||| || || | || ||| | || || Sbjct 1653063 ATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGA 1653005 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 ||| ||| || ||| | || | |||||||| ||||| |||||||| |||| Sbjct 1653004 GTCACCTGAGGCTCGTGAGCTCAACAAGCAGATCTTTGAGACCATTTATCACGCTGCCCT 1652945 Query 76333 GGAGGCGAGTTGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 || ||| | ||||| | | | ||| |||| || || ||||||| | Sbjct 1652944 CACTGC-CTCCGTGCAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGTTCCC 1652886 Query 76392 CCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTA 76449 |||| || | || | || ||||| || |||| |||| || || || || | || Sbjct 1652885 CCGCCTCTGAGGGTATCCTCCAGTTCGACATGT-GGAACGTCAAGCC-CTCTGACCTCTG 1652828 Query 76450 CGACTGGGA---TGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506 |||||||| | ||| ||||| ||||| | || | ||||||||||| | Sbjct 1652827 GGACTGGGAGACTCTTCGAGAGGAA---GTCAAGACACACGGCATCCGTAACAGTCTGCT 1652771 Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566 | || || ||||| || ||| ||| | || || |||| || || || ||||| || Sbjct 1652770 CCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGA 1652711 Query 76567 ACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626 || ||||| | |||||||||| || | ||||| |||||||| ||||||| Sbjct 1652710 GCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAA 1652651 Query 76627 CAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 76686 | || |||| ||||| | || ||||| |||||| | | ||||||| | | Sbjct 1652650 CCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCG 1652591 Query 76687 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAA 76746 ||| | | | |||||||||||| || || | | ||||| | ||| ||||| Sbjct 1652590 CATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGC 1652531 Query 76747 TCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCG 76806 ||| || || || ||||||||| | | ||| || | ||||| || ||||| Sbjct 1652530 TCTGTATAAGACTGTTTGGGAAATCTCTCAGCGCCAGGTCGTTCAGATGGCTGCTGATCG 1652471 Query 76807 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATG 76864 ||| ||||||||||| |||| ||| |||| | |||| | || |||||| Sbjct 1652470 AGGTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATG 1652413 Query 76865 TCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTA 76923 |||| || | |||||| | || | || ||||| | ||| ||||| ||||| ||||| Sbjct 1652412 GGCAAGATCACCAGTATGCACTTTGCAGGC-TGGAAGCTGGGCCTCAAGACCGGCATGTA 1652354 Query 76924 CTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||| || || || |||| || || |||||||||| Sbjct 1652353 CTACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCA 1652313 >seq7 Length=3608416 Score = 125 bits (138), Expect = 9e-24 Identities = 333/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || |||| | | | || | ||| |||||| ||| |||| Sbjct 1893878 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTC-CTCCTTTGCCCAGCG 1893820 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || ||| ||||||||||||||| || | ||| | |||| | Sbjct 1893819 TCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTT 1893760 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || |||||| || || || || || || Sbjct 1893759 CTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 1893700 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA---TAG 65258 ||||||||||| ||| || |||||| || ||| || | || | || | | Sbjct 1893699 TGATGAGGGTCTTCACACTGACTTTGCC-TG--CCTCCTCCACTCTCACCTCAAGGGTCG 1893643 Query 65259 ACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 ||| | | | ||||| | ||| | | || || || |||||| | | ||| Sbjct 1893642 TGCCAGCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTT 1893583 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 | || || || || || ||| || |||| ||||||||||| ||| |||| Sbjct 1893582 CCTCACCGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTA 1893523 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCA-----TTTGG 65433 |||||||| || | ||||||||||| |||| || | | | | Sbjct 1893522 CATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGG-----CAACGAGAAGGTCTAC 1893468 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 || || | || || || ||||| ||||| ||||| ||||| ||| |||||||||||| Sbjct 1893467 AAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGTAAGACCAACTTC 1893408 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| |||| ||||| Sbjct 1893407 TTCGAGAAGCGTGTTGCCGACTA 1893385 >seq1 Length=6424668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27858 GCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCC 27917 |||||| || |||||||| || ||||| || || | ||| ||||||||||| || Sbjct 2872156 GCGCTCCAGAACAAGTTGAGCAATGCGGTCGCCCTCCTTCACCTCAAAGTCGGATTCGTT 2872097 Query 27918 GTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACC 27977 || |||||||| | ||| ||||| | ||| || |||| ||| || ||||| || || Sbjct 2872096 ATGGTTGAAGAGCAGGACCTTGACCTGACCGCGGTAATCGGCATCGATGACACCAGCGCC 2872037 Query 27978 AACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCAT 28030 | ||| |||||| ||||||||| ||||| || |||| || |||| Sbjct 2872036 TGTGTCAATGAAATGCTTGGAAGCGAGACCCGATCGAGGGGCAATGCGTCCAT 2871984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569458314720