Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01]
19 sequences; 46,178,503 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq2 233 2e-56
seq7 125 9e-24
seq1 87.8 2e-12
>seq2
Length=5316833
Score = 233 bits (258), Expect = 2e-56
Identities = 1141/1781 (64%), Gaps = 51/1781 (3%)
Strand=Plus/Minus
Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270
||| ||| ||||| ||||||| || | | || ||| || || || ||||| ||
Sbjct 1654069 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATTGAGCGAGT 1654010
Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 75328
||||||||||||| || |||||| || | | |||| || || | || || |||
Sbjct 1654009 CTTGGAGACATACAACCTTATGTCC--AGCAAATTCTTCACGCATGCCTCTCCCACGCTC 1653952
Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388
||||| || || || || || || |||| ||||||| | | | | |||||
Sbjct 1653951 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1653892
Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448
||| || | || ||||| | ||||| | | ||||| ||||| ||| ||||
Sbjct 1653891 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1653832
Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508
|| |||||||| || || | || | | | || | | || ||| || ||
Sbjct 1653831 GGTGGTATTGGTCTGAACGTACACCGTATCCGTGCTACTGGCTCCTACATTGCCGGTACC 1653772
Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568
|| ||| || | ||| || |||| |||||||| || || ||| ||| || ||||||
Sbjct 1653771 AACGGTACGTCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 1653712
Query 75569 GTAAATCAAGCGGGGCGTC--GCAAGG-GGTCCATC-GCGGTCTACTTGGAACCATGGCA 75624
|| | || | | ||| | || | ||| | | || ||||| | || || |||||
Sbjct 1653711 GTCGACCAGG-GTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 1653653
Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684
| ||| || | ||||||||||| | || ||||| ||| | || |||| ||
Sbjct 1653652 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCAGGGC 1653593
Query 75685 TAGAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742
| || || |||| || ||| ||||| || || |||||||||||||| ||||| ||
Sbjct 1653592 CCGTGACCT--TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAG 1653535
Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGG 75801
||| | ||| | || | || || || || || || || ||||| || |||
Sbjct 1653534 AACGGTGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTATGGA 1653475
Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGAC 75858
|||||||| || || || ||| |||||| || ||||||| | | ||| |||
Sbjct 1653474 -GAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAA---GAC 1653419
Query 75859 TGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917
| | | || | | || | ||||| | || ||||| | | ||||| ||||| |||| |
Sbjct 1653418 TAT-CAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 1653360
Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977
||| ||||| ||||||||||| || ||| ||||| ||||||||||| | || || |
Sbjct 1653359 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCA 1653300
Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037
|| ||||| || || ||||| |||||| | |||||| | || ||| ||||
Sbjct 1653299 TCCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTG 1653240
Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAGAGACTCGCACTT 76094
| ||||| | || || | || || || | ||| | || ||| || || |
Sbjct 1653239 TCTGCAACCTTGCTTCTCTGGCTCTGCCCTCCTTCATCAACTACGATGAGGCTTGC---T 1653183
Query 76095 TTGATTATGAAAAACTT-CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153
|| | | || || || || | ||| || ||||| || || ||| ||
Sbjct 1653182 ACGACT-TCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTGTTCGCAACCTGAACAAGATC 1653124
Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213
|| || || || || || || || || || ||| ||||| ||| | ||
Sbjct 1653123 ATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGGCCC 1653064
Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATTTGA 76272
|||||| | |||||||| || || || |||| || || | || ||| | || ||
Sbjct 1653063 ATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGA 1653005
Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332
||| ||| || ||| | || | |||||||| ||||| |||||||| ||||
Sbjct 1653004 GTCACCTGAGGCTCGTGAGCTCAACAAGCAGATCTTTGAGACCATTTATCACGCTGCCCT 1652945
Query 76333 GGAGGCGAGTTGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391
|| ||| | ||||| | | | ||| |||| || || ||||||| |
Sbjct 1652944 CACTGC-CTCCGTGCAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGTTCCC 1652886
Query 76392 CCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTA 76449
|||| || | || | || ||||| || |||| |||| || || || || | ||
Sbjct 1652885 CCGCCTCTGAGGGTATCCTCCAGTTCGACATGT-GGAACGTCAAGCC-CTCTGACCTCTG 1652828
Query 76450 CGACTGGGA---TGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506
|||||||| | ||| ||||| ||||| | || | ||||||||||| |
Sbjct 1652827 GGACTGGGAGACTCTTCGAGAGGAA---GTCAAGACACACGGCATCCGTAACAGTCTGCT 1652771
Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566
| || || ||||| || ||| ||| | || || |||| || || || ||||| ||
Sbjct 1652770 CCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGA 1652711
Query 76567 ACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626
|| ||||| | |||||||||| || | ||||| |||||||| |||||||
Sbjct 1652710 GCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAA 1652651
Query 76627 CAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 76686
| || |||| ||||| | || ||||| |||||| | | ||||||| | |
Sbjct 1652650 CCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCG 1652591
Query 76687 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAA 76746
||| | | | |||||||||||| || || | | ||||| | ||| |||||
Sbjct 1652590 CATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGC 1652531
Query 76747 TCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCG 76806
||| || || || ||||||||| | | ||| || | ||||| || |||||
Sbjct 1652530 TCTGTATAAGACTGTTTGGGAAATCTCTCAGCGCCAGGTCGTTCAGATGGCTGCTGATCG 1652471
Query 76807 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATG 76864
||| ||||||||||| |||| ||| |||| | |||| | || ||||||
Sbjct 1652470 AGGTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATG 1652413
Query 76865 TCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTA 76923
|||| || | |||||| | || | || ||||| | ||| ||||| ||||| |||||
Sbjct 1652412 GGCAAGATCACCAGTATGCACTTTGCAGGC-TGGAAGCTGGGCCTCAAGACCGGCATGTA 1652354
Query 76924 CTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964
||| || || || |||| || || ||||||||||
Sbjct 1652353 CTACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCA 1652313
>seq7
Length=3608416
Score = 125 bits (138), Expect = 9e-24
Identities = 333/503 (66%), Gaps = 18/503 (4%)
Strand=Plus/Minus
Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081
|||||||| | ||||| || |||| | | | || | ||| |||||| ||| ||||
Sbjct 1893878 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTC-CTCCTTTGCCCAGCG 1893820
Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141
|| |||| || || ||| ||||||||||||||| || | ||| | |||| |
Sbjct 1893819 TCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTT 1893760
Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201
||| | |||||||| ||||||||||| || || |||||| || || || || || ||
Sbjct 1893759 CTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 1893700
Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA---TAG 65258
||||||||||| ||| || |||||| || ||| || | || | || | |
Sbjct 1893699 TGATGAGGGTCTTCACACTGACTTTGCC-TG--CCTCCTCCACTCTCACCTCAAGGGTCG 1893643
Query 65259 ACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318
||| | | | ||||| | ||| | | || || || |||||| | | |||
Sbjct 1893642 TGCCAGCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTT 1893583
Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378
| || || || || || ||| || |||| ||||||||||| ||| ||||
Sbjct 1893582 CCTCACCGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTA 1893523
Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCA-----TTTGG 65433
|||||||| || | ||||||||||| |||| || | | | |
Sbjct 1893522 CATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGG-----CAACGAGAAGGTCTAC 1893468
Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493
|| || | || || || ||||| ||||| ||||| ||||| ||| ||||||||||||
Sbjct 1893467 AAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGTAAGACCAACTTC 1893408
Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516
|| |||||||| |||| |||||
Sbjct 1893407 TTCGAGAAGCGTGTTGCCGACTA 1893385
>seq1
Length=6424668
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 27858 GCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCC 27917
|||||| || |||||||| || ||||| || || | ||| ||||||||||| ||
Sbjct 2872156 GCGCTCCAGAACAAGTTGAGCAATGCGGTCGCCCTCCTTCACCTCAAAGTCGGATTCGTT 2872097
Query 27918 GTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACC 27977
|| |||||||| | ||| ||||| | ||| || |||| ||| || ||||| || ||
Sbjct 2872096 ATGGTTGAAGAGCAGGACCTTGACCTGACCGCGGTAATCGGCATCGATGACACCAGCGCC 2872037
Query 27978 AACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCAT 28030
| ||| |||||| ||||||||| ||||| || |||| || ||||
Sbjct 2872036 TGTGTCAATGAAATGCTTGGAAGCGAGACCCGATCGAGGGGCAATGCGTCCAT 2871984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569458314720
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