Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 199 1e-45 seq7 150 5e-31 seq5 107 6e-18 seq1 93.3 1e-13 >seq2 Length=5316833 Score = 199 bits (220), Expect = 1e-45 Identities = 580/881 (66%), Gaps = 19/881 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||||||||| || || |||||| || | ||||| ||||| Sbjct 1653262 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 1653321 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 1653322 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 1653381 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| ||| Sbjct 1653382 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 1653441 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | | ||||| || || || || || |||||| Sbjct 1653442 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCATAGCAGTCGGCAAGGCCAGGG 1653499 Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924 |||| | |||||| | ||||| ||| | || || | | |||||| ||| || Sbjct 1653500 CACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATGAAA 1653556 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | |||| ||||| || ||||||||| | ||| | |||||| | ||||| Sbjct 1653557 AGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTACCGTGG 1653616 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || | ||||| || ||||| || || || ||| Sbjct 1653617 TTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 1653676 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| ||| | |||| |||||||| || ||||| |||||||| || ||||||||| Sbjct 1653677 AAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACA 1653736 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||||||| || ||| || || || || ||||| ||| ||| | || |||| Sbjct 1653737 CGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAATGTAGGAGCCAGTA 1653796 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220 | || | | || | | || ||||||||||| | |||| || || || || || Sbjct 1653797 GCACGGATACGGTGTACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACA 1653855 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGC 156279 ||| | ||||| | | || || |||||| || || | ||| | | ||| ||| Sbjct 1653856 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGC 1653914 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || ||||| || | || || || |||||||| || || || | ||||| | | Sbjct 1653915 AAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGCGTGA 1653974 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGA 156398 | | || | |||||| | |||||||||| | ||||| || | |||| | Sbjct 1653975 AGAATTTGCTGGACATAAGGTTGTATGTCTCCAAGACTCGCTCAATATCATCACCCCAG- 1654033 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 |||| | ||| || | ||| ||| |||||||| ||||| |||||| || ||||| Sbjct 1654034 ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATC 1654093 Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 1654094 TTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1654134 >seq7 Length=3608416 Score = 150 bits (166), Expect = 5e-31 Identities = 291/427 (68%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291 || || || ||||| |||||||||||| || || | | ||| || | || Sbjct 1894097 GCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAACGATTCAGTGGC 1894038 Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 || || || | |||| || ||| ||| || || | ||||| |||||| || ||| Sbjct 1894037 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 1893978 Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411 || || || || || || ||||| || |||||||| || ||| |||| | Sbjct 1893977 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 1893918 Query 133412 AAACTATTCAACGCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTAT 133470 | || |||||||||||| | || |||| || || |||||| | |||||||| || Sbjct 1893917 TACCTCTTCAACGCCATT-GAGACCATTCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 1893859 Query 133471 TAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 |||||||||||| ||| | ||||| ||||||||||| || |||| || Sbjct 1893858 CCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGT 1893799 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 ||||| || || ||||||||||| ||| |||||| || ||||| || ||||||||| | Sbjct 1893798 TGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT 1893739 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650 | || || ||| || || ||||| || || || | || |||| |||||||| || Sbjct 1893738 CATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGA 1893679 Query 133651 ATTTGCC 133657 |||||| Sbjct 1893678 CTTTGCC 1893672 >seq5 Length=4590821 Score = 107 bits (118), Expect = 6e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 555983 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 556042 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| |||||||| ||||| Sbjct 556043 TCCTTCAAGAAAGCAGCAGCACCGTGGGCAATCATACAATCACGTTCCATTTCTCCGAAT 556102 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||||||||| ||||| | ||||||| |||| || || || Sbjct 556103 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGT 556146 >seq1 Length=6424668 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 4582916 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 4582860 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| |||||||||||| || || || | Sbjct 4582859 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 4582800 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 4582799 ACACCAACCATTTCACCAGG 4582780 Score = 89.7 bits (98), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| | || ||||||| || |||| ||||||||| |||||||| || | ||| |||| Sbjct 4333913 GAAGCTGGGAAGCACCGTATGCGATCAAACAATCACGTTCCATTTCTCCCAGACGTAGAC 4333854 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC----G 251589 ||||||| || | | ||| || | ||| ||||||||||| | | ||||| | Sbjct 4333853 CACCATCTCGTGAGCGACCTTCTGTAGGTTGACGAGTGAGGATGGCTCGGGGACCTCGAG 4333794 Query 251590 ATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGA 251649 || ||| | || ||| || | ||||| |||||||| ||||||||| | || Sbjct 4333793 ATCGAGAG----TGCATCTTGTCTTGCACCATGTGCTTGAGTCGCTGGTAGTAGATAGGT 4333738 Query 251650 CCGATGAAGA 251659 ||| |||||| Sbjct 4333737 CCGTTGAAGA 4333728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817241704403