Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7 192 8e-43 seq2 127 3e-23 >seq7 Length=3608416 Score = 192 bits (212), Expect = 8e-43 Identities = 356/510 (70%), Gaps = 18/510 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || | Sbjct 1894227 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 1894169 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| | ||| |||| || Sbjct 1894168 TCTCCAAGGATCTCCACG----ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTT 1894113 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||| || ||| ||||| ||| ||||| || || ||||||||| | Sbjct 1894112 GTCTCTCACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGT 1894054 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 1894053 CGAACGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGAT 1893994 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || |||||||| || || || ||||||||| ||||||| Sbjct 1893993 CATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGA 1893934 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || | | || | ||| ||||||| |||||| || || | || | | | || | Sbjct 1893933 GCCCGCCCAGC-GAACCTACCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGA 1893875 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 ||||||||||||| || |||||| | | | || ||| | ||||||| |||| || Sbjct 1893874 AGGCCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCT 1893817 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 ||| | ||| || || || ||||| ||||| ||| || ||| | | ||||| || Sbjct 1893816 CGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTG 1893757 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||| || |||||||||||||| Sbjct 1893756 GCTCAAGAAGCGTGGTCTCATGCCCGGTCT 1893727 >seq2 Length=5316833 Score = 127 bits (140), Expect = 3e-23 Identities = 183/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| || |||||||| || | || || || || ||||| || | || Sbjct 1653960 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 1653901 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 1653900 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 1653841 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | || |||| | || || | ||| ||||| | Sbjct 1653840 AAGATGGCTGGTGGTATTGGTCTGAACGTACACCGTATCCGTGCTACTGGCTCCTACATT 1653781 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| ||| ||||| |||| || |||||||| || || ||| |||| Sbjct 1653780 GCCGGTACCAACGGTACGTCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 1653721 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||| ||||||||| Sbjct 1653720 GCTCGCTATGTCGACCAG 1653703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809367415078