Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 253 3e-62 seq7 125 9e-24 seq1 87.8 2e-12 >seq2 Length=5316833 Score = 253 bits (280), Expect = 3e-62 Identities = 1149/1789 (64%), Gaps = 53/1789 (3%) Strand=Plus/Plus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| |||||| Sbjct 1652306 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 1652365 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | || | |||||| | || |||| |||||| || Sbjct 1652366 TTGAGGCCCAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1652424 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 1652425 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1652482 Query 110501 ATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATA 110557 || | || ||| || || | ||||||||||| || ||| ||| ||||| | Sbjct 1652483 ATCTGAACGAC---CTGGCGCTGAGAGATTTCCCAAACAGTCTTATACAGAGCCTTGACA 1652539 Query 110558 TCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTC 110617 || | ||||| | | || ||||| |||||||| | | | ||| | | |||| Sbjct 1652540 TCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTC 1652599 Query 110618 ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATG 110677 ||| | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 1652600 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 1652659 Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 |||||||| ||||| | || |||||||||| | ||||| || || ||||| Sbjct 1652660 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 1652719 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1652720 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 1652779 Query 110798 TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 110852 ||||| | || | ||||| ||||| ||| | |||||||| || | | Sbjct 1652780 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 1652836 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | || || || |||| ||||||| ||||| || | || | || ||||| ||||||| Sbjct 1652837 GAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCCT 1652894 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 110971 ||||| |||| ||| | | | ||||| | ||| | || |||| ||| Sbjct 1652895 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 1652953 Query 110972 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 111031 ||||| ||||| |||||||| | || | ||| || ||| ||| || || | Sbjct 1652954 TGATAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCAGGTGACTCGAAGGGC 1653013 Query 111032 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 ||| || | || || |||| || || || |||||||| | |||||| || | ||| Sbjct 1653014 ATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGCCGGTG 1653072 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 111150 ||||| ||| || || || || || || || || || |||| ||| Sbjct 1653073 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 1653132 Query 111151 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 111209 || || ||||| || ||| | || || || || | | || | || || Sbjct 1653133 CAGGTTGCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAG 1653188 Query 111210 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 ||| || | ||| | || || || | || || | ||||| ||||| || Sbjct 1653189 CCTCATCGTAGTTGATGAAGGAGGGCAGAGCCAGAGAAGCAAGGTTGCAGACAGCGACCT 1653248 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 | || | |||||| | |||||| || || | |||||| || || || || | Sbjct 1653249 CGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGA 1653308 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || | Sbjct 1653309 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 1653368 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTT 111444 |||| ||||| | | ||||| || | ||||| | || | | | || || | || Sbjct 1653369 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGTCTTGC--- 1653425 Query 111445 GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 111502 | ||| | |||||| |||||||||| ||| || || || |||||||| ||| || | Sbjct 1653426 GACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCATAGCAG 1653484 Query 111503 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACC 111562 |||| || || || || || || || | || | ||| | ||| | ||||| Sbjct 1653485 TCGGCAAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACA 1653544 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTCTACACCGAGCCT 111620 |||||||||||||| || || ||||| ||| || |||| || || | || ||| Sbjct 1653545 CGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGGCCCTGACCT 1653602 Query 111621 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 111680 | || | ||| ||||| || | ||||||||||| | || ||| | |||||| |||| Sbjct 1653603 CCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCT 1653662 Query 111681 CAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTG 111737 | || |||| || | || || ||| ||| | || | |||||||| || | Sbjct 1653663 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAG 1653722 Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 111797 || ||| || || |||||||| |||| || ||| | || ||| || || || || Sbjct 1653723 TGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAA 1653782 Query 111798 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 111857 | || | | || | | | || | || || |||||||| |||||| ||| | Sbjct 1653783 TGTAGGAGCCAGTAGCACGGATACGGTGTACGTTCAGACCAATACCACCAGCCATCTTGG 1653842 Query 111858 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 111917 |||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 1653843 AGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATAT 1653902 Query 111918 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 111977 | | | ||||||| |||| || || || || || || |||||||| || || | Sbjct 1653903 CAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAG 1653962 Query 111978 TTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAAT 112035 || || |||| | | || |||||| || ||||||||||||||| ||||| Sbjct 1653963 AGGCATGCGTGAAGAATTTGCT--GGACATAAGGTTGTATGTCTCCAAGACTCGCTCAAT 1654020 Query 112036 GTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || ||| || | | || ||||||| ||||| ||| ||| Sbjct 1654021 ATCATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 1654069 >seq7 Length=3608416 Score = 125 bits (138), Expect = 9e-24 Identities = 333/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 1893385 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTACCACCAAGGGAGATGTTCTCCATG 1893444 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485 ||||| || || || | || || | | | | || |||| |||| Sbjct 1893445 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 1893499 Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545 ||||||| | || |||||||||||| ||| ||||||||||| |||| ||| Sbjct 1893500 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 1893559 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| || || || || || |||| | | |||||| || || || | | ||| Sbjct 1893560 CACAGGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 1893619 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 | ||||| | | | ||| | | || | || | || ||| || ||||| Sbjct 1893620 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 1893676 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| ||||||||||| || || || || || || |||||| ||||| |||| Sbjct 1893677 AGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCA 1893736 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 ||||||| |||||||| | ||| | |||| | ||| | || |||||||||||||| Sbjct 1893737 TGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCT 1893796 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841 | ||| || || |||| || || | ||| |||||| ||| ||| | | | |||| Sbjct 1893797 CAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 1893855 Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864 || ||||| | |||||||| Sbjct 1893856 CGGATGGCCCAGTCGGCCTTCTT 1893878 >seq1 Length=6424668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 2871984 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 2872043 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| | ||||| ||| | |||||||| || || Sbjct 2872044 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 2872103 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 2872104 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 2872156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031850842400