Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 201 1e-46 seq7 185 1e-41 >seq2 Length=5316833 Score = 201 bits (222), Expect = 1e-46 Identities = 1165/1842 (63%), Gaps = 43/1842 (2%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1652313 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 1652372 Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 || |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 1652373 CCAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 1652431 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1652432 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1652491 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || | | ||||||||| |||||| | || || ||| | ||| | ||||| Sbjct 1652492 ACCTGGCGCTGAGAGATTTCCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATG 1652551 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 1652552 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 1652611 Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 118163 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 1652612 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 1652671 Query 118164 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 118223 ||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| ||| Sbjct 1652672 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 1652731 Query 118224 AAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 118283 | || |||| || ||| || ||||| || || | ||| || |||||||||| || Sbjct 1652732 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 1652791 Query 118284 TTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | | | | | | | || || ||| |||||||| || | | || | | Sbjct 1652792 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 1652849 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| || |||||||||||||| | || || || || |||| || || || | Sbjct 1652850 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGG 1652909 Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 | ||||| ||| |||| | ||||| || |||||| |||||||| || || | Sbjct 1652910 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCT 1652966 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517 |||| || | || | | ||||| || || || | | || || | | Sbjct 1652967 CAAAGATCTGCTTGTTGAGCTCACGAGCCTCAGGTGACTCGAAGGGCATGCG-CAGAGCA 1653025 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | || |||| || || || || ||||| || ||||| || || || | ||| ||| Sbjct 1653026 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGCCGGTGGCGCATGTTACTG 1653085 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || || || || ||| |||||| | | | || || || Sbjct 1653086 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACA 1653145 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 118694 ||||||| ||| | || | ||| | | | || | || || ||| || | || Sbjct 1653146 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 1653202 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 | | || || || | || || || || || |||| | ||| || || | Sbjct 1653203 ATGAAGGAGGGCAGAGCCAGAGAAGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 1653262 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| |||||||| ||||||| ||| || || ||||| || | ||||||||| || Sbjct 1653263 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 1653322 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| | Sbjct 1653323 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 1653382 Query 118875 TTGAGAATAGCCTTCCAGA-CATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCT 118931 | ||||| || | ||| | | || | ||| || | | ||| || | ||||| Sbjct 1653383 TCAAGAATGGCGTACCAAAGCTTCTG-AGCCTTGATAGTCTTGCG-ACCCTTG-CCCTCC 1653439 Query 118932 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 118991 | |||||||||| ||| || || || ||||| || || | || | || || || Sbjct 1653440 TTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCATAGCAGTCGGCAAGGCCAGGG 1653499 Query 118992 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 119051 || | ||||| | || | ||| | ||| || ||||| ||||||||||| || Sbjct 1653500 CACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGA 1653559 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111 || |||||||| || || ||| || || || | | || || | || || || Sbjct 1653560 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTACCGTGGTTC 1653619 Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171 ||| | || | || || | || ||| | |||||| || || ||||| | || | Sbjct 1653620 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 1653679 Query 119172 G-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACA 119225 | || | ||| | | ||| |||||| ||||| | |||||| ||| || ||| Sbjct 1653680 GCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACA 1653736 Query 119226 CGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTAT 119283 |||||||| |||| | ||| | || || || || || || || ||| | | Sbjct 1653737 CGAAGCATAGGAACAACACCGTTCGACGTACCGTTGGTACCGGCAATGTAGGAGCC--AG 1653794 Query 119284 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 119343 | || | || | ||| | || || ||||||||| || ||| ||| ||||| || | Sbjct 1653795 TAGCACGGATACGGTGTACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCAC 1653854 Query 119344 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 119403 | | ||||| | ||||||| || || || ||| |||| | | | | ||||| Sbjct 1653855 AGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGC 1653914 Query 119404 AGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGA 119463 | |||| ||| ||| || || || ||||||||||| || || | || || ||| Sbjct 1653915 AAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGCGTGA 1653974 Query 119464 ACA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 119521 | | | || |||||| || ||| ||||||||||| ||| || || || Sbjct 1653975 AGAATTTGCT--GGACATAAGGTTGTATGTCTCCAAGACTCGCTCAATATCATCACCCCA 1654032 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 119581 ||||| | || || ||||| | ||||| || || || | | |||| || | Sbjct 1654033 GATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAAT 1654092 Query 119582 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | ||||||| |||||| ||||||| ||||| || Sbjct 1654093 CTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1654134 >seq7 Length=3608416 Score = 185 bits (204), Expect = 1e-41 Identities = 535/812 (66%), Gaps = 15/812 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 1893385 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTACCACCAAGGGAGATGTTCTCCATG 1893444 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || | | | || | |||| |||||||| Sbjct 1893445 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-CCAAGAGCGACAAGGAGACG 1893503 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| ||| || |||||||| |||| ||| ||| Sbjct 1893504 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACA 1893563 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| ||||||| || || || | ||| | || Sbjct 1893564 GGGAAGAGCCTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTG 1893623 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | || | || ||| || |||||| || Sbjct 1893624 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 1893680 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||| ||||| |||||||| || || |||||| |||||| |||||||| Sbjct 1893681 AGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 1893740 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 1893741 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 1893800 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | ||||| |||| |||||||| ||||||||| | ||| | | ||| || Sbjct 1893801 AGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGAT 1893860 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | ||||| || ||| || || | ||||| || || | ||||| | | Sbjct 1893861 GGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTAGGT 1893920 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | || || |||||||| | || ||||| || || || ||| |||| Sbjct 1893921 TCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGAT 1893980 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 1893981 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTC-G 1894038 Query 130383 CTGCAAAATTGTT-ATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 | | ||| ||| || ||||| ||||| ||||| || |||| || || || Sbjct 1894039 CCACTGAATCGTTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCA 1894098 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGA 130498 ||||| | | || ||| |||| | ||| || | |||||||||| ||| Sbjct 1894099 AGGATGTGAGAGACAAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGA 1894158 Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| |||||||| | |||||| |||||||| Sbjct 1894159 TCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 1894190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435053121640