Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 260 2e-64 seq7 149 7e-31 >seq2 Length=5316833 Score = 260 bits (288), Expect = 2e-64 Identities = 1149/1793 (64%), Gaps = 52/1793 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| ||| | | ||||| || || || ||||| || Sbjct 1654069 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATTGAGCGAGT 1654010 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || |||||| || | | |||| || || | || || ||| Sbjct 1654009 CTTGGAGACATACAACCTTATGTCC--AGCAAATTCTTCACGCATGCCTCTCCCACGCTC 1653952 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || || || || |||||| |||| ||||||| | | | | ||||| Sbjct 1653951 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1653892 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 1653891 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1653832 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| || || | || | | | || | | || ||| || || Sbjct 1653831 GGTGGTATTGGTCTGAACGTACACCGTATCCGTGCTACTGGCTCCTACATTGCCGGTACC 1653772 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| || | ||| || |||| |||||||| || || ||| ||| || |||||| Sbjct 1653771 AACGGTACGTCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 1653712 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | ||| ||| || || | || |||| || ||||| |||||| Sbjct 1653711 GTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCAC 1653652 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| || | Sbjct 1653651 TCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCAGGGCC 1653592 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || || ||| ||| || ||||| || ||||| ||||||||| | ||||| ||| Sbjct 1653591 CGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAAC 1653532 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814 || | ||| | || | || || || || ||||| || |||| ||| | || || Sbjct 1653531 GGTGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTTGCCGACTGCTAT-GGAGA 1653473 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTG 104872 |||||| || || || ||| ||||||||| |||| ||| | | | | || ||| | Sbjct 1653472 GGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT- 1653416 Query 104873 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 | || | || | | ||| | || ||||| || | || || ||||| || | |||| Sbjct 1653415 CAAGGCTCAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATT 1653356 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||| ||||| || ||||| |||| ||||| || |||||||| | ||| ||| Sbjct 1653355 CATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCG 1653296 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 || ||||| || || || ||||| | || | | | || ||| ||||| || Sbjct 1653295 AAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTG 1653236 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111 ||||| || || | ||||| ||| | | || || | || ||| | Sbjct 1653235 CAACCTTGCTTCTCTGGCTCTGCCCTCCTTCAT-----CAACTACGATGAGGCTTGCT-- 1653183 Query 105112 TGAAAAACTCCACGAAGTT--ACGAAAACTGTCA--------CCAAAAACCTAAACAGAG 105161 | ||| || |||||| || | | |||| ||||| |||| Sbjct 1653182 ---ACGACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTGTTCGCAACCTGAACAAGA 1653126 Query 105162 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 | || ||| || ||||| || || ||||| || ||| ||| | ||||| | Sbjct 1653125 TCATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGGC 1653066 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT 105280 | |||||||| ||||||||||| || || |||| ||| || || || ||| | || Sbjct 1653065 CCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTC 1653007 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || || || || |||| || || ||||||||||| |||||||| || Sbjct 1653006 GAGTCACCTGAGGCTCGTGAGCTCAACAAGCAGATCTTTGAGACCATTTATCACGCTGCC 1652947 Query 105341 CTTGAGGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 || || || | || |||| ||| || ||||| || ||||| |||||| Sbjct 1652946 CTCACTGCCTCCGTGC--AGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGTT 1652889 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 105458 | || || || | || | || || || || |||||| | | || || | || Sbjct 1652888 CCCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCT 1652829 Query 105459 ACGACTGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 |||||||| ||| || || | | | ||||| | || | ||||||||||| || Sbjct 1652828 GGGACTGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCT 1652771 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 | | ||||| ||||| || ||| ||| | || || |||| || || || ||||| || Sbjct 1652770 CCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGA 1652711 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 |||||||| | |||||||| | || | ||||| || ||||| | ||||||| Sbjct 1652710 GCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAA 1652651 Query 105637 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 105696 | || | | ||||| || || ||||| |||||| | | ||||||| | | Sbjct 1652650 CCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCG 1652591 Query 105697 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAA 105756 ||| | | | |||||||||||| || ||| | || || || | ||| Sbjct 1652590 CATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGC 1652531 Query 105757 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 105816 |||| || |||||||||||| | | ||| || | ||||| || ||||| Sbjct 1652530 TCTGTATAAGACTGTTTGGGAAATCTCTCAGCGCCAGGTCGTTCAGATGGCTGCTGATCG 1652471 Query 105817 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATG 105874 ||| ||||||||||| |||| ||| |||| || |||| | || |||||| Sbjct 1652470 AGGTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATG 1652413 Query 105875 TCCAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTA 105933 |||| || | ||||||| | | || | |||||| ||| ||||| || || ||||| Sbjct 1652412 GGCAAGATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTGGGCCTCAAGACCGGCATGTA 1652354 Query 105934 TTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGAACCAG 105986 ||||| || | |||| || || |||||||||| | ||| ||||| Sbjct 1652353 CTACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTG-ACCAG 1652302 >seq7 Length=3608416 Score = 149 bits (164), Expect = 7e-31 Identities = 355/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||||||||| ||| | |||||||| |||||| | |||| ||||| | | | | | Sbjct 1894190 TGGACTGCTGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTGACT 1894131 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | |||| || || | ||||||| || ||||| |||| || ||||| ||| Sbjct 1894130 GCCGATGAGCAGTTCTTTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATT 1894071 Query 94558 GTTTTTGAGAATATCAAT-AACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615 || ||||| || ||| | | | || ||||| || |||| | || || | | Sbjct 1894070 GTCAACGAGAACCTCGTCGAACGATTCAG-TGGCGAGGTCCAGATCCCC-GAGGCTCGTT 1894013 Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674 |||||| | | ||| |||| ||| | | | || ||||| ||| ||| Sbjct 1894012 GCTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTC 1893954 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAAC 94733 || |||| || || ||||| || || ||| | | ||||| | ||||| | || Sbjct 1893953 ATTGACACCTACATCAAGGAGCCCGCCCAGC-GAACCTACCTCTTCAACGCCATTGAGAC 1893895 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||| || || | |||||| || || ||||| || ||| | | | || | | | Sbjct 1893894 CATTCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTC 1893835 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | ||||||| |||| ||| | || || || ||||||||||||||||||| |||| Sbjct 1893834 CT-CCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTG 1893776 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 ||||| | |||| | |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 1893775 CCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCA 1893716 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 1893715 ACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTTTGC 1893673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260661475560