Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 306 4e-78 seq6 176 5e-39 seq7 161 1e-34 >seq2 Length=5316833 Score = 306 bits (338), Expect = 4e-78 Identities = 1148/1767 (65%), Gaps = 69/1767 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||||||| ||||||||| | |||| Sbjct 1652336 GCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGCCCAGCTTCCAGCCTGCAAAGTGC 1652395 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||| ||| ||| | | ||||||| || |||| ||||||||| ||||| |||||| Sbjct 1652396 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 1652455 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 ||||| || || ||||| || ||||| | || | || | | | | |||||||| Sbjct 1652456 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCGCT-GAGAGATTTCCCA 1652514 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || ||||| |||| | || | || |||| || | | | | || Sbjct 1652515 AACAGTCTTATACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 1652571 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||| | || |||| | || |||| || | ||| | ||| | | | || Sbjct 1652572 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 1652631 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 || || | || | | ||| || | || |||| || ||||| || || | Sbjct 1652632 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGTCGTTG 1652688 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || ||||||||| || || ||||| | || || Sbjct 1652689 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACT 1652748 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | | | ||| || || | |||||| |||||| ||||| Sbjct 1652749 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 1652808 Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || | | || | ||| | ||| | ||| |||| |||||||||| | Sbjct 1652809 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCGAAC 1652863 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| ||||| || || || || ||| ||| || ||| || |||||| ||| Sbjct 1652864 TGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTA 1652923 Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||||||| |||| || | ||||| |||||||||||| |||||||| |||||| Sbjct 1652924 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGATAAATGGTCTCAAAGATCTGCTTGTT 1652982 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | | || |||| || ||||| | || || || | ||| | || || || Sbjct 1652983 GAGCTCACGAGCCTCAGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAG 1653042 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791 ||||||||| || | | || || ||||||||| |||| | | || | ||||| | | Sbjct 1653043 GCCCTGAACACCAAGACCAATGGGCCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 1653101 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| |||||||| |||||||||||| ||||||| | | || | Sbjct 1653102 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCT 1653161 Query 80852 CATGAAGTTTCTGAAAGTCGAATT--GGTTCCCCTTCACAAATGCCGGAAGGCT----CA 80905 || | |||| |||||| | | || | | ||| ||| ||| || Sbjct 1653162 TGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAGGAGGGCAGAGCCA 1653221 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCG 80962 | || || || ||||| || || ||||| |||| || | ||| ||| | ||||| | Sbjct 1653222 GAGAAGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCAATAATTTCAG 1653278 Query 80963 TGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020 |||||| || || ||| || ||||| ||||| || ||||| |||| |||||| Sbjct 1653279 TGCACAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 1653336 Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080 || ||||||||| |||| | ||| | |||||||| ||| | || || ||||||| Sbjct 1653337 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 1653396 Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140 ||||| || | ||||||| |||||| ||||| || | | ||||| |||| Sbjct 1653397 CCAAAGCTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTA 1653456 Query 81141 AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 | ||||||| | || | | ||| | | ||| | ||||||||||| ||||||| Sbjct 1653457 CAGAGCCTCGAACTCCTCTCCATAGCAGT-CGGCAAGGCCAGGGCACTCGTTGGGGCACA 1653515 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 |||| |||||| || || || ||| |||||||||| ||||||||||| |||| Sbjct 1653516 TCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 1653575 Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319 || ||| ||||| ||| | ||||||| | ||| ||||| || | || || | Sbjct 1653576 CGAGGAAAAGGTCACGGGCCCTGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGA 1653635 Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373 | || | || || | ||||| ||||| || || | ||| | | || | |||| Sbjct 1653636 ACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG- 1653694 Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 ||||||||||| ||| || || ||||| ||| || ||||| | |||||| | | Sbjct 1653695 --TTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAA 1653752 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCT 81491 ||| | ||| |||||| ||||| | || || || | || || || || Sbjct 1653753 CACCGTTCGACGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGTA 1653812 Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 || ||||| || ||||| | | ||| || ||| ||||| || | || || Sbjct 1653813 CGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 1653870 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 || |||||||| || || || | ||||| |||| |||||| || ||||| || || Sbjct 1653871 GTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG-GG 1653929 Query 81612 GCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 ||| | |||||| ||||| || || || | || || |||| | | | |||| Sbjct 1653930 GCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGCGTGAAGAATTTGCTGGACA 1653989 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 | |||| || || ||| ||| || |||||| ||||| ||||| | || |||| Sbjct 1653990 TAAGGTTGTATGTCTCCAAGACTCGCTCAATATCATCACCCCAGATACCAACAGACACAC 1654049 Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756 |||| | ||||| ||| ||||| |||| Sbjct 1654050 GCATGATCATGTGCTGAGGGCG-CTCG 1654075 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 3771426 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 3771367 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 3771366 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 3771307 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 3771306 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 3771247 Query 27595 G 27595 | Sbjct 3771246 G 3771246 >seq6 Length=4319897 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||| || || || |||||||| || ||||||||||| ||||| |||| ||| | Sbjct 3144481 GTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGAC 3144540 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||| ||||| || ||||| ||||||||||| || || Sbjct 3144541 AATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATCCCTCCTGACCAGCAGCGCCTGATC 3144600 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||||||||| |||| || ||||| || ||||| || | || |||||| Sbjct 3144601 TTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 3144660 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| ||| | || || || ||||| Sbjct 3144661 TCTACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 3144695 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 3144925 ATGCAGATTTTTGTTAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 3144984 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 3144985 GACACTATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 3145044 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| || Sbjct 3145045 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 3145103 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| || || | || |||||||| || || Sbjct 3145104 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCCA 3145154 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| ||||| || || || |||||| Sbjct 3144697 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACCCTGGAAGTCGAGTCATCC 3144756 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||| || || || ||||||||||| |||||||| || || Sbjct 3144757 GATACCATTGATAACGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 3144816 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||||| || || || | ||||| || Sbjct 3144817 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 3144876 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| || | || | |||||||| ||||| Sbjct 3144877 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 3144923 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 3144184 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 3144243 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || ||||||||||||||||| ||||| || ||| Sbjct 3144244 TCCGACACTATCGACAATGTTAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGAC 3144303 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | ||||| || || ||||| || ||||| | || ||||| | || || Sbjct 3144304 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCTGATTAC 3144363 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| ||||||||||| || || | || || || ||||| Sbjct 3144364 AACATTCAGAAGGAGTCCACTCTTCACCTTGTTCTCCGCCTCCGTGGTGG 3144413 >seq7 Length=3608416 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 2834124 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 2834065 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 2834064 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 2834005 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 2834004 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGC-GACTACAA 2833946 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || |||||||| Sbjct 2833945 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGCGGTGG 2833898 Score = 113 bits (124), Expect = 5e-20 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | || | || || |||| |||||| Sbjct 1893878 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 1893819 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || || || ||| || || || ||||| ||| | ||| ||||| ||| Sbjct 1893818 CTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTC 1893759 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| |||||| | || || |||||||| |||||||| Sbjct 1893758 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 1893699 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 || ||||| || ||| || ||||| Sbjct 1893698 GATGAGGGTCTTCACACTGACTTTGC 1893673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310264551280