Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6 181 2e-40 seq7 176 1e-38 seq2 138 3e-27 >seq6 Length=4319897 Score = 181 bits (200), Expect = 2e-40 Identities = 175/222 (79%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||||| || || ||||||||||| ||||| || |||||||| || || | ||||| | Sbjct 3145145 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGG-T 3145087 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || ||||||||||| || || || ||||| |||| || Sbjct 3145086 GCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACC 3145027 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| |||||||| || || |||||| | || ||||| || Sbjct 3145026 CTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCAATAGTGTCACTGGACTCGACCTCAAG 3144967 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||||||||| ||||| | |||||| Sbjct 3144966 GGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 3144925 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||||||||| || || ||||| ||||| | ||||| | || || Sbjct 3144398 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCC 3144339 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || | |||||| ||||| || |||| || ||||||||| Sbjct 3144338 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 3144279 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || ||||||||||| ||||| ||| Sbjct 3144278 TGAATCTTGGACTTAACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 3144219 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 3144218 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3144187 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || || || || || ||||| || || |||||||| | |||||| Sbjct 3144680 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCT 3144621 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| ||||| || ||||||||||| | || || |||||| Sbjct 3144620 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCTTTGTCC 3144561 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || || || |||||||| || || || ||||| |||||||| ||| Sbjct 3144560 TGAATCTTTGACTTGACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 3144501 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| || || || Sbjct 3144500 TTGCCAGTGAGGGTTTTGAC 3144481 >seq7 Length=3608416 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || ||||| | |||||| Sbjct 2833913 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 2833972 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || |||||||| || | || ||||||||| Sbjct 2833973 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 2834032 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 2834033 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 2834092 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 2834093 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 2834127 >seq2 Length=5316833 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | ||||| || |||||||| || |||||||| Sbjct 3771248 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 3771307 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || |||||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 3771308 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 3771367 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 3771368 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 3771426 Score = 118 bits (130), Expect = 2e-21 Identities = 205/293 (70%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||||||||||||||| | |||| |||||| ||||| ||||| || |||| Sbjct 1653310 GTTCTTTTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAGAGCATGAATGGGTTTCC 1653366 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| || ||| | |||||| | |||||||| ||| || || |||||| Sbjct 1653367 GGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGTCTTGCG 1653426 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || || ||||||||||||| ||| || ||||||| ||| ||||||| || Sbjct 1653427 ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCATAGCAGTC 1653486 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-ACT 178327 | || || || ||| |||||||| | || |||| | |||| |||| ||| || Sbjct 1653487 GGCAAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTT--TTCAACA 1653544 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTCT 178380 || |||||||| || |||| | |||| | ||| ||||| || | ||| || Sbjct 1653545 CGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCCCT 1653597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151717818935