Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001599515.1_202016-03-01] 19 sequences; 46,178,503 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 113 3e-20 seq7 100 2e-16 >seq6 Length=4319897 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || ||||| ||||| || ||||| || || || || |||| Sbjct 3144925 ATGCAGATTTTTGTTAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 3144984 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || ||| ||||| || ||| | || || ||||| Sbjct 3144985 GACACTATTGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 3145044 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || ||||||| | ||||| || |||| |||||| Sbjct 3145045 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 3145104 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 3145105 ATCCAGAAGGAGTCAAC 3145121 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| ||||| ||||| || | Sbjct 3144187 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 3144246 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| |||| | || | || ||||| || || | || || || || Sbjct 3144247 GACACTATCGACAATGTTAAGTCCAAGA-TTCAGGACAAGGAGGGCATTCCCCCCGACCA 3144305 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || |||||||| || || || |||| ||||| | |||||||| Sbjct 3144306 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCTGATTACAA 3144365 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 3144366 CATTCAGAAGGAGTCCAC 3144383 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| || || || || ||||| || || | Sbjct 3144697 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACCCTGGAAGTCGAGTCATCC 3144756 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || ||| | || || |||||| Sbjct 3144757 GATACCATTGATAACGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 3144816 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| ||||| || || | || ||| | ||| |||||| Sbjct 3144817 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 3144876 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | || || ||| Sbjct 3144877 ATCCAGAAGGAATCTACTCTCCACTTGGTT 3144906 >seq7 Length=3608416 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||||||||| || |||||||| || || || || || Sbjct 2834127 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2834068 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 2834067 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 2834008 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| ||||| || || || || | |||||| | |||| ||| Sbjct 2834007 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTAC 2833948 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 2833947 AACATCCAGAAGGAGTCCAC 2833928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009521729652