Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1580 104 5e-17 >seq1580 Length=534993 Score = 104 bits (114), Expect = 5e-17 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| || |||| ||| | | ||||| | ||| | | ||||| ||||| || Sbjct 382455 TGGACTCTGCCATTGTCTATGACCGCGATTTCCAATACCAATACTTTGGCTTCAAGACTT 382396 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 ||||| ||| || |||||||| ||||| || ||||| || || || |||||||||| Sbjct 382395 TGGAGCGATCATACCTCCTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCAGCACATGA 382336 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACA 248962 | ||||| ||| |||| || ||| ||||| || ||| | || | ||||| |||| Sbjct 382335 TCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTCTTGGAGACATACA 382276 Query 248963 CCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 | ||| || || || | ||||||||| | || ||||||||||||||||| | Sbjct 382275 ACCTGATGTCCAGCAAATTCT---TCACACATGCCTCTCCCACGCTCTTCAACGCCGGCA 382219 Query 249020 CC 249021 || Sbjct 382218 CC 382217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073739187403904