Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1580 293 2e-74 seq1757 141 8e-29 seq1658 107 2e-18 seq1180 107 2e-18 >seq1580 Length=534993 Score = 293 bits (324), Expect = 2e-74 Identities = 639/954 (67%), Gaps = 2/954 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || |||||||| || |||||| | |||||| || || Sbjct 381504 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCAC 381563 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || || ||||| | |||| Sbjct 381564 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 381623 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 381624 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGT 381683 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | | ||| || ||| ||| || | ||||||||||| ||||| || Sbjct 381684 TTCTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 381742 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || | |||||||||||||| ||||| || | | | || ||||| || | Sbjct 381743 CTCGAACTCCTCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGT 381802 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || |||||||| || |||| |||||||| || ||||| || ||| ||| Sbjct 381803 CCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAA 381862 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || || ||||| || ||||||||||| ||| |||||| | ||| | || || || Sbjct 381863 AAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 381922 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 ||||| | ||||| ||||||||||| | |||||| || || |||| ||| ||||| || Sbjct 381923 GACGTCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 381982 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| || || || ||||||||| | || | ||||| || || | |||||| || Sbjct 381983 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 382042 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || || | || || | || || | ||| |||| | || Sbjct 382043 TGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGGCC 382102 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| || || || ||||| |||||||| ||||| Sbjct 382103 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 382162 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 || ||||| || || | | |||||||| || || |||| ||| | | || || | Sbjct 382163 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 382222 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 ||| ||| || || || ||| || || ||| || | ||||| || ||||| || Sbjct 382223 GGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGT 382282 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | || || || || || ||||| | | || ||||| ||||||| Sbjct 382283 CTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTG 382342 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 ||||| | |||||| | |||| ||| |||| || ||||| || | || || || Sbjct 382343 CTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTT 382402 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || ||||| || | || | || || || || | || ||||| || | ||| Sbjct 382403 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 382456 >seq1757 Length=1535963 Score = 141 bits (156), Expect = 8e-29 Identities = 462/708 (65%), Gaps = 20/708 (3%) Strand=Plus/Minus Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755 || || ||||| || || ||||||||||| |||||||| | ||||| |||| Sbjct 1424997 GCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 1424938 Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 || || || | | ||||| | ||||| ||||| || || | || || ||| | Sbjct 1424937 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 1424878 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG-AAACG 57874 || || || | || || || ||||| || || ||| | ||||| || | || ||| Sbjct 1424877 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 1424818 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 || || || ||||| || || || || ||| ||| |||||||| || ||| | || Sbjct 1424817 TA-CCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 1424759 Query 57935 CAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGC 57991 | |||||| | | | || || | || ||| || | || | || ||||| || Sbjct 1424758 CCGATGGATCCA---GGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTGC 1424702 Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051 || || ||||| ||||| || ||| || | || || ||| | ||||| || || Sbjct 1424701 TGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGG 1424642 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 || |||||||| ||||| || ||||||| | || || || || |||||||| || || Sbjct 1424641 TCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACAC 1424582 Query 58112 TGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACCGACGCGGGATCGCA 58167 ||| ||||| ||||| | |||||||| | ||| | | | || ||| | Sbjct 1424581 TGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGC-AAGC-AGAT--GA 1424526 Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227 || ||| || || || || || ||| | || || | ||||| |||| || || || | Sbjct 1424525 TCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTC 1424466 Query 58228 CGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287 | ||| | ||||| |||||| ||| | ||| ||||||||||||| || || | Sbjct 1424465 CCTGCGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 1424406 Query 58288 ACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGA 58345 | | || | ||| || | |||| || |||||| | | || || || || Sbjct 1424405 ATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGT--TTACAAGGCCACCAACCCCTTCGA 1424348 Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || ||| | ||||| |||| |||||||| ||||| ||||| || Sbjct 1424347 CTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAA 1424300 >seq1658 Length=732392 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 133324 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 133383 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 133384 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 133443 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||||| || || || |||||||| ||| | || || | | | || ||||||| || Sbjct 133444 CAGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGA-TGGACGCACCCTGAGCGACTA 133502 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 133503 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 133538 >seq1180 Length=846099 Score = 107 bits (118), Expect = 2e-18 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || || || |||||| | || || || |||| Sbjct 496753 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGA---GTCC 496697 Query 31253 ---GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | |||| | || || | || ||||||||| || | || || || Sbjct 496696 AGTGACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGAT 496637 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| || ||||||||||| | || ||||||| || Sbjct 496636 CAGCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTAC 496577 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || || || || |||||||| || || || |||| Sbjct 496576 AACATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 496536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755378425760