Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1108 105 1e-18 seq1757 98.7 2e-16 >seq1108 Length=138093 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | ||||| | |||||||||||||| || ||||||||||| || | Sbjct 123996 CGCCAAGCGTCACCGAAAGATCT-TGCGAGATAACATCCAGGGTATCACCAAGCCCGCCA 124054 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| ||||| || ||||| ||||||||| |||||| Sbjct 124055 TCCGACGTCTCGCTCGCCGAGGTGGTGTCAAGCGTATCTCTG 124096 Score = 89.7 bits (98), Expect = 8e-14 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| |||||| ||||||| || || |||| ||| | Sbjct 124153 TGATCTACGAGGAGACCCGCGGTGTCCTGAAGACCTTCCTCGAGGGTGTCATCCGTGACG 124212 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||| || | ||| | ||||| | Sbjct 124213 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACAGTCACATCTCTTGATGTTGTCTACG 124272 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | |||| || |||||||| | | || ||||| || ||||| || Sbjct 124273 CCCTGAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAAGCT 124319 >seq1757 Length=1535963 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | ||||| ||||| || |||||||||||||| ||||| Sbjct 1146236 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATTCAGGGAATCACCAAGCCCGCTAT 1146294 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| | |||| Sbjct 1146295 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 1146335 Score = 93.3 bits (102), Expect = 7e-15 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| | |||| ||||||| || || |||| || | Sbjct 1146397 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGCGACG 1146456 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| || |||||||| || || ||||||||||||||| | || | ||||| | Sbjct 1146457 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCCCTCGACGTAGTCTACG 1146516 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || || |||| | |||||||| || ||||| Sbjct 1146517 CTCTCAAGCGCCAGGGACGTACCCTCTATGGTTTCGGTGGTTAA 1146560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073391500754