Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1580 165 1e-35 >seq1580 Length=534993 Score = 165 bits (182), Expect = 1e-35 Identities = 570/882 (65%), Gaps = 14/882 (2%) Strand=Plus/Plus Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||| || || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 381578 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 381637 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63090 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 381638 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 381696 Query 63091 TTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATACAATCGTTCGAACTCG 63146 | || ||| | |||| | || ||||| | |||| |||||||| Sbjct 381697 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCC 381752 Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206 ||||| || | | | | ||||| || || | || ||||||| || ||| || ||| Sbjct 381753 TCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCG 381812 Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63266 | | | || || ||||| || |||||||| |||||||| || | || || || | | Sbjct 381813 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGG 381872 Query 63267 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63326 | | ||||| || || ||||| ||||| |||||| | | | ||||| Sbjct 381873 GCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACGTCAGAG 381932 Query 63327 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63386 ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | Sbjct 381933 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 381992 Query 63387 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63446 || | ||| ||||| || | || | | ||| |||| || |||||| ||| |||| ||| Sbjct 381993 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTG 382052 Query 63447 GTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCC 63504 ||||||| || ||| ||| | ||||| ||| | | || | | || || || | Sbjct 382053 GTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GGCCAATACCAC 382110 Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTAT 63564 | ||||| || ||||| | || || || | || || ||||| ||||| || || | Sbjct 382111 CAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGT 382170 Query 63565 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63624 | || |||| | || | || || |||| |||| | || || || || || | Sbjct 382171 CGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGA 382230 Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684 | | || ||||| || || || || |||| || | || ||||| ||||| | Sbjct 382231 AGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGA 382290 Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744 || || ||||| ||| || || | |||||||| | |||||||||||| | Sbjct 382291 CTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGC 382350 Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804 || || ||||| || || || | | ||| ||| |||||||| || || |||| Sbjct 382351 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 382410 Query 63805 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 | || | |||| || || || || || | ||| | |||| Sbjct 382411 AGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 382452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931797630480