Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1580 179 5e-40 >seq1580 Length=534993 Score = 179 bits (198), Expect = 5e-40 Identities = 573/881 (65%), Gaps = 12/881 (1%) Strand=Plus/Plus Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886 |||||| || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 381578 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 381637 Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 62945 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 381638 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 381696 Query 62946 TTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCGAACTCGT 63002 | || ||| | ||| | ||| ||||| | |||| |||||||| | Sbjct 381697 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 381753 Query 63003 CTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63062 |||| || | | | || ||||| || || | || ||||||| || ||| || |||| Sbjct 381754 CTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCGT 381813 Query 63063 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 63122 | | || || ||||| || |||||||| |||||||| || | || || || | || Sbjct 381814 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 381873 Query 63123 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182 | ||||| || || ||||| ||||| |||||| | | | ||||| | Sbjct 381874 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACGTCAGAGT 381933 Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242 |||| || || | ||| ||||| | | | || || || ||||| || ||||| || | | Sbjct 381934 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 381993 Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302 | | ||| ||||| || | || | | ||| |||| || ||| || |||||||| |||| Sbjct 381994 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 382053 Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCC 63360 | || | || ||| ||| | ||||| ||| | | || | | || || || || Sbjct 382054 TACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GGCCAATACCACC 382111 Query 63361 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 63420 ||||| || ||||| | || || || | ||||| ||||| ||||| ||||| || Sbjct 382112 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 382171 Query 63421 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63480 ||| |||| | || | || || |||| |||| | || || || || || || Sbjct 382172 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 382231 Query 63481 TAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63540 | || ||||| || || || || |||| || | || ||||| ||||| | | Sbjct 382232 GAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 382291 Query 63541 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63600 | || ||||| ||| || || | |||||||| | |||||||||||| | Sbjct 382292 TCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCG 382351 Query 63601 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63660 || || ||||| || || || | | ||| ||| |||||||| || || ||||| Sbjct 382352 CTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAA 382411 Query 63661 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 || | |||| || || || || || | ||| | |||| Sbjct 382412 GTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 382452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616333448800