Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1757 201 1e-46 seq1580 158 1e-33 >seq1757 Length=1535963 Score = 201 bits (222), Expect = 1e-46 Identities = 540/817 (66%), Gaps = 23/817 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| ||||| ||| |||||||| Sbjct 1424284 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCAT 1424343 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || ||| | |||| |||| | ||| Sbjct 1424344 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 1424398 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| ||| Sbjct 1424399 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 1424458 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || || || || || |||| ||| ||||||| || || || | ||| Sbjct 1424459 GCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 1424518 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 1424519 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 1424575 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||| ||||| |||||||| || || |||||| |||||| ||| Sbjct 1424576 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 1424635 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 1424636 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 1424695 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || ||| ||||| |||| ||||||| |||||||||| | ||| | | ||| Sbjct 1424696 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 1424755 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 || ||||| | ||||| || ||| || |||| ||||| || || | |||||| Sbjct 1424756 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGG 1424815 Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 127822 | | | | || || |||||||| | || ||||| || || || ||| | Sbjct 1424816 TAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAG 1424875 Query 127823 TGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 |||| | | ||| || | ||| | ||||||| | || || ||| ||||| || Sbjct 1424876 TGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGAC 1424934 Query 127882 CTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940 ||| | | ||| | | || ||||| ||||| ||||| ||| |||| || | Sbjct 1424935 CTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAAGA 1424993 Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 127997 | || ||||| | | ||| ||| |||| | ||| || | |||||||| | Sbjct 1424994 AAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCAT 1425053 Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||||| || ||||| | |||||| |||||||| Sbjct 1425054 GGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 1425090 >seq1580 Length=534993 Score = 158 bits (174), Expect = 1e-33 Identities = 1163/1849 (63%), Gaps = 57/1849 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 380593 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 380652 Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 | |||||||| | | || | ||||| || | |||| | ||| || || |||| Sbjct 380653 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATTGTGGGGTCTTTCATG 380711 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 380712 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 380771 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || | | ||| ||||| || || | || || ||| | ||| | ||||| Sbjct 380772 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 380831 Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 | || || || || || ||| | || ||| || | | ||||||| | | Sbjct 380832 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 380888 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| ||||| || | || |||| | | ||| | |||||||| || Sbjct 380889 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAA 380944 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 |||||| ||||| |||| | |||||||||| ||||| ||||| |||||||| || Sbjct 380945 CTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 381004 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| |||| || |||| || ||| || ||||| || || | ||| || ||||| || Sbjct 381005 GTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACG 381064 Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || || | | | | | | || || | | |||||||| || | | | Sbjct 381065 GATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGC 381122 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| || |||||||||||||| | || || || || || | || || Sbjct 381123 TTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTG 381182 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| |||| | ||||| || |||||| ||||| || Sbjct 381183 GAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAA 381239 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 || ||||| || || | || | | |||||| || || || | | || Sbjct 381240 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG- 381298 Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || |||| || || || || ||||| || ||||| || || || | ||| Sbjct 381299 CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCAT 381358 Query 116292 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||| || ||||| || || || || ||| |||||| | | | || || || Sbjct 381359 GTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 381418 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 | ||||||| ||| | || | ||| | | | ||| | || || ||| || Sbjct 381419 GCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCATA---GCAAGCCTCATC 381475 Query 116412 AT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 | ||| | || || || | || || || || || |||| | ||| || Sbjct 381476 GTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGG 381535 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 || |||||| |||||||| || |||| || || || ||||| || | |||||| Sbjct 381536 GGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTT 381595 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 ||| || ||| ||| || ||||||||||||||||| |||| | || ||||| || Sbjct 381596 TTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGT 381655 Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCG 116645 |||| || ||||| || | ||| | || | | || | | || | ||| || | Sbjct 381656 CTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTTG 381713 Query 116646 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC--CACAGCCTCTGAG 116703 ||||||| |||||||||| ||| || ||||| ||||| || || |||| || | | Sbjct 381714 -CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAACAG--TCGGCG 381770 Query 116704 AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 116763 || || || || | || || | || | ||| | || || ||||| |||||| Sbjct 381771 AGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTC 381830 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 ||||| || || |||||||| || || ||| || || || || | || || | Sbjct 381831 ATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTA 381890 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || ||| | || | || || | || || | |||||| || || ||||| Sbjct 381891 CCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACGTCAGAGTGCCAAGGCTCGAGGTAG 381950 Query 116884 ACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 | || | | ||| | || | | ||| |||||| ||||| | || || ||| Sbjct 381951 ATGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTT 382009 Query 116940 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGA 116997 || || |||||||| |||| | ||| | ||| || || || || || || || Sbjct 382010 GAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCAATGTAGGA 382069 Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 117057 | | | || | || | ||| | || || |||||||| || ||| ||| ||||| Sbjct 382070 GCC--AGTAGCACGGATACGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGGAGATC 382127 Query 117058 TGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 117117 || || | ||||| | ||||||| || || || ||| |||| | | | Sbjct 382128 ATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACC 382187 Query 117118 AGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 117177 | |||||| |||| ||| ||| || || || ||||||||||| || || | || Sbjct 382188 AAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCA 382247 Query 117178 TGGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTT 117235 || |||| | | || ||||||| | ||| ||||||||||| || || | Sbjct 382248 TGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCAT 382305 Query 117236 CCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATAC 117295 | || |||||| | || || ||||| | ||||| || || || | | ||| Sbjct 382306 CACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTAC 382365 Query 117296 CATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | || | | | ||||||| |||||| ||||||| ||||| || Sbjct 382366 CGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 382414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492031034480