Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1580 237 2e-57 seq1236 104 3e-17 seq1757 86.0 7e-12 >seq1580 Length=534993 Score = 237 bits (262), Expect = 2e-57 Identities = 1084/1693 (64%), Gaps = 61/1693 (4%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 ||||| || ||||| || || ||||| ||| |||||| || | || | ||||| | Sbjct 380625 CGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGT 380683 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | ||| || | ||| | ||||| ||||| |||||||| ||||| Sbjct 380684 GATCTTGCCCATTGTGGGGTCTTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAA 380743 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAG 109582 ||| |||||||| ||||| | | || ||| ||| | | ||||| || | Sbjct 380744 GGCACCTCGATCAGCAGCCATCTGAACGA----CTTGGCGCTGAGAGATCTCCCAAACGG 380799 Query 109583 TCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC--- 109639 |||| |||| | ||||| ||| | || |||| ||||| ||||| || ||| Sbjct 380800 TCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCT 380859 Query 109640 CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699 |||| | | || | | |||||| | | ||||| ||||| | | | || | || Sbjct 380860 CAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGTCGACAAGGT 380913 Query 109700 CAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 | || || | ||||| || || |||||||| || ||||| |||||| Sbjct 380914 CCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGA 380973 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 |||| | |||||||| ||||| ||||| |||||||| || || || | || || | Sbjct 380974 TGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAG 381033 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876 | ||||| ||||| | ||| |||||||| |||| || | ||||| || ||| || | Sbjct 381034 TAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAA 381093 Query 109877 TTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936 | ||||| || | | || | || | | |||||| || || | Sbjct 381094 GAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGTCGAACTGGA 381147 Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCA 109996 | | |||||||| || || ||||| ||||| | ||| | ||||| ||| |||| Sbjct 381148 GGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCA 381207 Query 109997 ACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 || | | | || | | || || || || || || ||||| || || || || || Sbjct 381208 GCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGC---TTGTTG 381263 Query 110056 AGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAG 110111 || |||| ||| | |||||||| | | || || || || |||| || || Sbjct 381264 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGCATCGGCAAG 381322 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||||||||| ||||||||||| || || ||||||| | ||||| | || Sbjct 381323 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGAC 381382 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||| ||| ||||||| | || || || | ||| || ||| | Sbjct 381383 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 381442 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGAGCAA 110290 || | || | | | || | | | || | || |||| | ||| ||||| | Sbjct 381443 GTGCAACTTCTTGAAGTCATA-GCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCA 381501 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 ||| ||||| ||||| |||| |||||| | | ||| || | |||||| || | Sbjct 381502 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGC 381561 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 ||| |||||| || ||| ||| | |||||| || || ||| |||||| |||| Sbjct 381562 ACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCAT 381621 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| ||||||||| ||||| | || || || ||||| | || |||||||| | ||| | Sbjct 381622 CCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA 381681 Query 110471 CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAA 110528 | || || ||| |||| | | || |||| ||||||||| ||||| Sbjct 381682 GTTTCTGAGCCTTGATAGTCTTGCG--ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAG 381739 Query 110529 GTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 |||| || |||| |||||| ||| || | || || || || || || | | Sbjct 381740 AGCCTCGAACTCCTCTCCGTA-ACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCA 381798 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | | ||| | || || ||||| | ||||||||| || ||||| ||||| | || Sbjct 381799 GCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGA 381858 Query 110648 AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGT 110707 ||||||||||||| ||| |||| || | ||| ||||| || || || | || | Sbjct 381859 GGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACT 381918 Query 110708 CCATGATATCCGAGTGCCATGGTTCGAGATAG------ACAGCGATGGATCCCTTACGAC 110761 | | || || |||||||| || ||||| ||| | ||| || || ||| | Sbjct 381919 CGAAGACGTCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT--GTT 381976 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 | || |||||| |||||||| || ||| |||||||| | |||||||||| || | Sbjct 381977 G-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACAC 382035 Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881 | | ||| ||| || ||||| ||| ||| | | ||||| || ||| | | Sbjct 382036 CGTTCGATGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGT 382095 Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAA 110940 || ||||||||||| ||| ||| || ||||| ||| |||| ||| | || Sbjct 382096 TCAGGCCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGAGTATCGTAG 382154 Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA 111000 || || ||||| || |||| | ||| | |||||||| |||| || || || Sbjct 382155 ATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGA 382214 Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCT 111058 || || || || |||||||| || || | ||||| ||| ||| ||| ||||||| Sbjct 382215 GGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGA--AGAATTTGCTGGACATCA 382272 Query 111059 TGTTGTATGTGTC 111071 ||||||||| || Sbjct 382273 GGTTGTATGTCTC 382285 >seq1236 Length=681905 Score = 104 bits (114), Expect = 3e-17 Identities = 250/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 375872 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 375930 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | ||||||| | | | | | || |||||||||||||| ||||| | Sbjct 375931 CAAATCCCCTGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 375990 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | ||||| | || | Sbjct 375991 TGATGCAAGGAGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGACCGA 376050 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || |||||||| ||| || || ||| Sbjct 376051 CACCGACAAACATTTCAACGAACTCAGAACCGC-TCACACTGAA-GAATGGTACTCCAGA 376108 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || |||| || || | |||||||| |||||||| | |||||| | | Sbjct 376109 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 376168 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||| ||||| || | || | ||| |||| ||| ||||| Sbjct 376169 AGCACCTCGAGGGATCTTAGCACCTAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 376225 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 376226 GCTCACAAACTCC 376238 >seq1757 Length=1535963 Score = 86.0 bits (94), Expect = 7e-12 Identities = 206/303 (68%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||||||||| || |||| || || Sbjct 1424572 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 1424631 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | || ||| |||||||| Sbjct 1424632 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 1424691 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| ||| |||||||| | ||||||| || ||||| ||| ||| || || Sbjct 1424692 ACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGC-AAAGGAGGAGTCCTTATCCTGGA 1424750 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGC-TTC 119728 ||| || ||||||| |||||| | || |||||||||| || | ||||| || Sbjct 1424751 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTA 1424809 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 | | || | ||| | || ||||| || || | |||||||| |||||||| Sbjct 1424810 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 1424868 Query 119789 CTC 119791 ||| Sbjct 1424869 CTC 1424871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961437568400